Hb_000538_300

Information

Type -
Description -
Location Contig538: 332385-336915
Sequence    

Annotation

kegg
ID rcu:RCOM_0303930
description Protein pecM, putative
nr
ID XP_012081882.1
description PREDICTED: WAT1-related protein At3g02690, chloroplastic [Jatropha curcas]
swissprot
ID Q93V85
description WAT1-related protein At3g02690, chloroplastic OS=Arabidopsis thaliana GN=At3g02690 PE=2 SV=1
trembl
ID A0A067LEY3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07969 PE=4 SV=1
Gene Ontology
ID GO:0016021
description wat1-related protein chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47708: 332472-336244
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000538_300 0.0 - - PREDICTED: WAT1-related protein At3g02690, chloroplastic [Jatropha curcas]
2 Hb_000208_270 0.1076601649 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
3 Hb_020400_020 0.1144978438 - - starch synthase isoform II [Manihot esculenta]
4 Hb_003688_140 0.1190038973 - - PREDICTED: uncharacterized protein LOC105640628 [Jatropha curcas]
5 Hb_000787_210 0.1388906642 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001969_130 0.1400634141 - - PREDICTED: molybdate transporter 2 [Jatropha curcas]
7 Hb_000084_140 0.1433425173 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
8 Hb_020141_030 0.1435180607 - - solanesyl diphosphate synthase, putative [Ricinus communis]
9 Hb_002811_050 0.1435861015 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
10 Hb_004109_130 0.1447115009 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
11 Hb_000005_100 0.1450785282 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
12 Hb_001221_400 0.1470293292 - - PREDICTED: CBS domain-containing protein CBSCBSPB1 [Jatropha curcas]
13 Hb_010098_040 0.1500042179 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
14 Hb_001916_150 0.1506336541 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3 [Vitis vinifera]
15 Hb_022693_020 0.1529543975 - - pectin acetylesterase, putative [Ricinus communis]
16 Hb_007982_040 0.1533875048 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
17 Hb_012799_190 0.1540028498 - - PREDICTED: uncharacterized protein LOC105648490 [Jatropha curcas]
18 Hb_000976_130 0.1545056031 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
19 Hb_001053_020 0.1559080148 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
20 Hb_000966_040 0.1570183965 - - hypothetical protein JCGZ_01642 [Jatropha curcas]

Gene co-expression network

sample Hb_000538_300 Hb_000538_300 Hb_000208_270 Hb_000208_270 Hb_000538_300--Hb_000208_270 Hb_020400_020 Hb_020400_020 Hb_000538_300--Hb_020400_020 Hb_003688_140 Hb_003688_140 Hb_000538_300--Hb_003688_140 Hb_000787_210 Hb_000787_210 Hb_000538_300--Hb_000787_210 Hb_001969_130 Hb_001969_130 Hb_000538_300--Hb_001969_130 Hb_000084_140 Hb_000084_140 Hb_000538_300--Hb_000084_140 Hb_020141_030 Hb_020141_030 Hb_000208_270--Hb_020141_030 Hb_010098_040 Hb_010098_040 Hb_000208_270--Hb_010098_040 Hb_000208_270--Hb_000787_210 Hb_000966_040 Hb_000966_040 Hb_000208_270--Hb_000966_040 Hb_002814_010 Hb_002814_010 Hb_000208_270--Hb_002814_010 Hb_020400_020--Hb_000084_140 Hb_004109_130 Hb_004109_130 Hb_020400_020--Hb_004109_130 Hb_065525_070 Hb_065525_070 Hb_020400_020--Hb_065525_070 Hb_020400_020--Hb_001969_130 Hb_001579_150 Hb_001579_150 Hb_020400_020--Hb_001579_150 Hb_000264_280 Hb_000264_280 Hb_003688_140--Hb_000264_280 Hb_000684_200 Hb_000684_200 Hb_003688_140--Hb_000684_200 Hb_000005_100 Hb_000005_100 Hb_003688_140--Hb_000005_100 Hb_004162_270 Hb_004162_270 Hb_003688_140--Hb_004162_270 Hb_003688_140--Hb_010098_040 Hb_000103_230 Hb_000103_230 Hb_000787_210--Hb_000103_230 Hb_000787_210--Hb_020141_030 Hb_000056_110 Hb_000056_110 Hb_000787_210--Hb_000056_110 Hb_034507_050 Hb_034507_050 Hb_000787_210--Hb_034507_050 Hb_001252_030 Hb_001252_030 Hb_000787_210--Hb_001252_030 Hb_000665_200 Hb_000665_200 Hb_001969_130--Hb_000665_200 Hb_001124_140 Hb_001124_140 Hb_001969_130--Hb_001124_140 Hb_002026_030 Hb_002026_030 Hb_001969_130--Hb_002026_030 Hb_022425_050 Hb_022425_050 Hb_001969_130--Hb_022425_050 Hb_000066_040 Hb_000066_040 Hb_001969_130--Hb_000066_040 Hb_001221_300 Hb_001221_300 Hb_001969_130--Hb_001221_300 Hb_007933_030 Hb_007933_030 Hb_000084_140--Hb_007933_030 Hb_000084_140--Hb_004109_130 Hb_000084_140--Hb_065525_070 Hb_000976_130 Hb_000976_130 Hb_000084_140--Hb_000976_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.665619 7.07207 7.50383 9.12226 0.337042 1.29488
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.65949 1.74099 0.396365 2.90169 24.2227

CAGE analysis