Hb_020400_020

Information

Type -
Description -
Location Contig20400: 6731-13088
Sequence    

Annotation

kegg
ID rcu:RCOM_0340270
description starch synthase, putative (EC:2.4.1.21)
nr
ID ABV25894.1
description starch synthase isoform II [Manihot esculenta]
swissprot
ID Q43847
description Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS2 PE=1 SV=3
trembl
ID B3SRP3
description Starch synthase, chloroplastic/amyloplastic OS=Manihot esculenta GN=SSII PE=2 SV=1
Gene Ontology
ID GO:0009501
description granule-bound starch synthase chloroplastic amyloplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20912: 6960-13246
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020400_020 0.0 - - starch synthase isoform II [Manihot esculenta]
2 Hb_000538_300 0.1144978438 - - PREDICTED: WAT1-related protein At3g02690, chloroplastic [Jatropha curcas]
3 Hb_000084_140 0.1177896381 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
4 Hb_004109_130 0.1178440869 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
5 Hb_065525_070 0.1243488298 - - unnamed protein product [Homo sapiens]
6 Hb_001969_130 0.1255804383 - - PREDICTED: molybdate transporter 2 [Jatropha curcas]
7 Hb_001579_150 0.1274857823 - - ATP binding protein, putative [Ricinus communis]
8 Hb_001109_160 0.1280989069 - - DNA binding protein, putative [Ricinus communis]
9 Hb_007933_030 0.1287405983 - - PREDICTED: uncharacterized protein LOC105639932 [Jatropha curcas]
10 Hb_000208_270 0.1289622212 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
11 Hb_002010_110 0.1305936998 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
12 Hb_000787_210 0.1338542991 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001053_020 0.1340310157 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
14 Hb_000056_110 0.1367401056 - - PREDICTED: uncharacterized protein LOC105630405 [Jatropha curcas]
15 Hb_001195_370 0.1390957328 - - -
16 Hb_002026_030 0.1396050078 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
17 Hb_000976_130 0.1426610739 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
18 Hb_008616_040 0.1455642516 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
19 Hb_012799_190 0.1477580139 - - PREDICTED: uncharacterized protein LOC105648490 [Jatropha curcas]
20 Hb_001250_020 0.1487989619 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_020400_020 Hb_020400_020 Hb_000538_300 Hb_000538_300 Hb_020400_020--Hb_000538_300 Hb_000084_140 Hb_000084_140 Hb_020400_020--Hb_000084_140 Hb_004109_130 Hb_004109_130 Hb_020400_020--Hb_004109_130 Hb_065525_070 Hb_065525_070 Hb_020400_020--Hb_065525_070 Hb_001969_130 Hb_001969_130 Hb_020400_020--Hb_001969_130 Hb_001579_150 Hb_001579_150 Hb_020400_020--Hb_001579_150 Hb_000208_270 Hb_000208_270 Hb_000538_300--Hb_000208_270 Hb_003688_140 Hb_003688_140 Hb_000538_300--Hb_003688_140 Hb_000787_210 Hb_000787_210 Hb_000538_300--Hb_000787_210 Hb_000538_300--Hb_001969_130 Hb_000538_300--Hb_000084_140 Hb_007933_030 Hb_007933_030 Hb_000084_140--Hb_007933_030 Hb_000084_140--Hb_004109_130 Hb_000084_140--Hb_065525_070 Hb_000976_130 Hb_000976_130 Hb_000084_140--Hb_000976_130 Hb_005332_150 Hb_005332_150 Hb_004109_130--Hb_005332_150 Hb_000966_040 Hb_000966_040 Hb_004109_130--Hb_000966_040 Hb_004109_130--Hb_065525_070 Hb_004109_130--Hb_000208_270 Hb_001109_160 Hb_001109_160 Hb_065525_070--Hb_001109_160 Hb_065525_070--Hb_000976_130 Hb_003029_140 Hb_003029_140 Hb_065525_070--Hb_003029_140 Hb_008616_040 Hb_008616_040 Hb_065525_070--Hb_008616_040 Hb_001250_020 Hb_001250_020 Hb_065525_070--Hb_001250_020 Hb_000665_200 Hb_000665_200 Hb_001969_130--Hb_000665_200 Hb_001124_140 Hb_001124_140 Hb_001969_130--Hb_001124_140 Hb_002026_030 Hb_002026_030 Hb_001969_130--Hb_002026_030 Hb_022425_050 Hb_022425_050 Hb_001969_130--Hb_022425_050 Hb_000066_040 Hb_000066_040 Hb_001969_130--Hb_000066_040 Hb_001221_300 Hb_001221_300 Hb_001969_130--Hb_001221_300 Hb_002010_110 Hb_002010_110 Hb_001579_150--Hb_002010_110 Hb_000230_450 Hb_000230_450 Hb_001579_150--Hb_000230_450 Hb_003582_090 Hb_003582_090 Hb_001579_150--Hb_003582_090 Hb_001579_150--Hb_002026_030 Hb_001221_400 Hb_001221_400 Hb_001579_150--Hb_001221_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.06479 53.4924 43.8739 64.9129 6.97092 8.56221
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.84913 3.96268 10.4851 20.2908 161.706

CAGE analysis