Hb_002010_110

Information

Type -
Description -
Location Contig2010: 106186-112622
Sequence    

Annotation

kegg
ID vvi:100265815
description vacuolar amino acid transporter 1
nr
ID XP_012082575.1
description PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
swissprot
ID P47082
description Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1
trembl
ID W9QTY5
description Uncharacterized protein OS=Morus notabilis GN=L484_013934 PE=4 SV=1
Gene Ontology
ID GO:0016021
description vacuolar amino acid transporter 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20441: 106345-107615 , PASA_asmbl_20442: 108176-109394 , PASA_asmbl_20443: 109970-112500
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002010_110 0.0 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
2 Hb_001221_400 0.1057458658 - - PREDICTED: CBS domain-containing protein CBSCBSPB1 [Jatropha curcas]
3 Hb_003494_130 0.1114218117 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 9-like [Jatropha curcas]
4 Hb_020400_020 0.1305936998 - - starch synthase isoform II [Manihot esculenta]
5 Hb_012799_190 0.1381905514 - - PREDICTED: uncharacterized protein LOC105648490 [Jatropha curcas]
6 Hb_001579_150 0.1458688755 - - ATP binding protein, putative [Ricinus communis]
7 Hb_000762_110 0.1459614123 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
8 Hb_000521_090 0.1465666164 - - PREDICTED: RING-H2 finger protein ATL5 isoform X1 [Jatropha curcas]
9 Hb_002894_090 0.1523950706 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase [Jatropha curcas]
10 Hb_000834_080 0.1531466088 - - PREDICTED: uncharacterized protein LOC105637718 [Jatropha curcas]
11 Hb_000140_060 0.1543390256 - - 50S ribosomal protein L5, putative [Ricinus communis]
12 Hb_002780_030 0.1570893074 - - PREDICTED: molybdate transporter 1 [Jatropha curcas]
13 Hb_005914_210 0.1574702388 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
14 Hb_011053_030 0.1575115903 - - -
15 Hb_000117_030 0.1585733196 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 [Jatropha curcas]
16 Hb_000538_300 0.1593636865 - - PREDICTED: WAT1-related protein At3g02690, chloroplastic [Jatropha curcas]
17 Hb_007933_030 0.1596145265 - - PREDICTED: uncharacterized protein LOC105639932 [Jatropha curcas]
18 Hb_004672_020 0.1603335486 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
19 Hb_000084_140 0.1606159441 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
20 Hb_002811_050 0.1642183166 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]

Gene co-expression network

sample Hb_002010_110 Hb_002010_110 Hb_001221_400 Hb_001221_400 Hb_002010_110--Hb_001221_400 Hb_003494_130 Hb_003494_130 Hb_002010_110--Hb_003494_130 Hb_020400_020 Hb_020400_020 Hb_002010_110--Hb_020400_020 Hb_012799_190 Hb_012799_190 Hb_002010_110--Hb_012799_190 Hb_001579_150 Hb_001579_150 Hb_002010_110--Hb_001579_150 Hb_000762_110 Hb_000762_110 Hb_002010_110--Hb_000762_110 Hb_000140_060 Hb_000140_060 Hb_001221_400--Hb_000140_060 Hb_002811_050 Hb_002811_050 Hb_001221_400--Hb_002811_050 Hb_001221_400--Hb_012799_190 Hb_000056_110 Hb_000056_110 Hb_001221_400--Hb_000056_110 Hb_003006_090 Hb_003006_090 Hb_001221_400--Hb_003006_090 Hb_003941_030 Hb_003941_030 Hb_003494_130--Hb_003941_030 Hb_026314_030 Hb_026314_030 Hb_003494_130--Hb_026314_030 Hb_000684_280 Hb_000684_280 Hb_003494_130--Hb_000684_280 Hb_000032_400 Hb_000032_400 Hb_003494_130--Hb_000032_400 Hb_011053_030 Hb_011053_030 Hb_003494_130--Hb_011053_030 Hb_000538_300 Hb_000538_300 Hb_020400_020--Hb_000538_300 Hb_000084_140 Hb_000084_140 Hb_020400_020--Hb_000084_140 Hb_004109_130 Hb_004109_130 Hb_020400_020--Hb_004109_130 Hb_065525_070 Hb_065525_070 Hb_020400_020--Hb_065525_070 Hb_001969_130 Hb_001969_130 Hb_020400_020--Hb_001969_130 Hb_020400_020--Hb_001579_150 Hb_004242_170 Hb_004242_170 Hb_012799_190--Hb_004242_170 Hb_000834_080 Hb_000834_080 Hb_012799_190--Hb_000834_080 Hb_001053_020 Hb_001053_020 Hb_012799_190--Hb_001053_020 Hb_000336_200 Hb_000336_200 Hb_012799_190--Hb_000336_200 Hb_000976_130 Hb_000976_130 Hb_012799_190--Hb_000976_130 Hb_012799_190--Hb_000762_110 Hb_000230_450 Hb_000230_450 Hb_001579_150--Hb_000230_450 Hb_003582_090 Hb_003582_090 Hb_001579_150--Hb_003582_090 Hb_002026_030 Hb_002026_030 Hb_001579_150--Hb_002026_030 Hb_001579_150--Hb_001221_400 Hb_005914_210 Hb_005914_210 Hb_000762_110--Hb_005914_210 Hb_000376_210 Hb_000376_210 Hb_000762_110--Hb_000376_210 Hb_001250_020 Hb_001250_020 Hb_000762_110--Hb_001250_020 Hb_002928_030 Hb_002928_030 Hb_000762_110--Hb_002928_030 Hb_000120_860 Hb_000120_860 Hb_000762_110--Hb_000120_860 Hb_000579_040 Hb_000579_040 Hb_000762_110--Hb_000579_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.75538 6.02895 5.21875 9.02887 0.992255 1.06168
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.50481 1.15929 1.82807 1.00776 18.8618

CAGE analysis