Hb_003494_130

Information

Type transcription factor
Description TF Family: zf-HD
Location Contig3494: 134685-135638
Sequence    

Annotation

kegg
ID rcu:RCOM_0107600
description hypothetical protein
nr
ID XP_012084702.1
description PREDICTED: zinc-finger homeodomain protein 9-like [Jatropha curcas]
swissprot
ID Q9LXG0
description Zinc-finger homeodomain protein 8 OS=Arabidopsis thaliana GN=ZHD8 PE=1 SV=1
trembl
ID B9T6Z3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0107600 PE=4 SV=1
Gene Ontology
ID GO:0003677
description zinc-finger homeodomain protein 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003494_130 0.0 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 9-like [Jatropha curcas]
2 Hb_002010_110 0.1114218117 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
3 Hb_003941_030 0.1336457895 - - Protease ecfE, putative [Ricinus communis]
4 Hb_026314_030 0.1376699111 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
5 Hb_000684_280 0.1426744154 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Jatropha curcas]
6 Hb_000032_400 0.1429659935 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
7 Hb_011053_030 0.1447990143 - - -
8 Hb_007576_150 0.1477624701 - - PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic [Jatropha curcas]
9 Hb_020400_020 0.1496938172 - - starch synthase isoform II [Manihot esculenta]
10 Hb_000212_370 0.1517988174 - - thioredoxin f-type, putative [Ricinus communis]
11 Hb_000495_080 0.1559319763 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
12 Hb_005914_210 0.155979301 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
13 Hb_000188_060 0.1576483424 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 4-like [Jatropha curcas]
14 Hb_002894_090 0.1580054181 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase [Jatropha curcas]
15 Hb_000834_080 0.1606656581 - - PREDICTED: uncharacterized protein LOC105637718 [Jatropha curcas]
16 Hb_003029_140 0.1610855879 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
17 Hb_005305_020 0.1646575483 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
18 Hb_001250_020 0.1649426138 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
19 Hb_000762_110 0.164955516 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
20 Hb_183963_010 0.1657081041 - - core region of GTP cyclohydrolase I family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_003494_130 Hb_003494_130 Hb_002010_110 Hb_002010_110 Hb_003494_130--Hb_002010_110 Hb_003941_030 Hb_003941_030 Hb_003494_130--Hb_003941_030 Hb_026314_030 Hb_026314_030 Hb_003494_130--Hb_026314_030 Hb_000684_280 Hb_000684_280 Hb_003494_130--Hb_000684_280 Hb_000032_400 Hb_000032_400 Hb_003494_130--Hb_000032_400 Hb_011053_030 Hb_011053_030 Hb_003494_130--Hb_011053_030 Hb_001221_400 Hb_001221_400 Hb_002010_110--Hb_001221_400 Hb_020400_020 Hb_020400_020 Hb_002010_110--Hb_020400_020 Hb_012799_190 Hb_012799_190 Hb_002010_110--Hb_012799_190 Hb_001579_150 Hb_001579_150 Hb_002010_110--Hb_001579_150 Hb_000762_110 Hb_000762_110 Hb_002010_110--Hb_000762_110 Hb_003941_030--Hb_000684_280 Hb_000318_130 Hb_000318_130 Hb_003941_030--Hb_000318_130 Hb_003941_030--Hb_000032_400 Hb_000661_090 Hb_000661_090 Hb_003941_030--Hb_000661_090 Hb_002078_300 Hb_002078_300 Hb_003941_030--Hb_002078_300 Hb_004375_050 Hb_004375_050 Hb_003941_030--Hb_004375_050 Hb_026314_030--Hb_011053_030 Hb_000866_050 Hb_000866_050 Hb_026314_030--Hb_000866_050 Hb_026314_030--Hb_000032_400 Hb_000834_080 Hb_000834_080 Hb_026314_030--Hb_000834_080 Hb_183963_010 Hb_183963_010 Hb_026314_030--Hb_183963_010 Hb_005305_020 Hb_005305_020 Hb_026314_030--Hb_005305_020 Hb_000684_280--Hb_000661_090 Hb_036790_120 Hb_036790_120 Hb_000684_280--Hb_036790_120 Hb_000537_070 Hb_000537_070 Hb_000684_280--Hb_000537_070 Hb_000684_280--Hb_011053_030 Hb_000189_250 Hb_000189_250 Hb_000684_280--Hb_000189_250 Hb_000032_400--Hb_011053_030 Hb_000189_520 Hb_000189_520 Hb_000032_400--Hb_000189_520 Hb_000032_400--Hb_000684_280 Hb_000175_050 Hb_000175_050 Hb_000032_400--Hb_000175_050 Hb_011053_030--Hb_000834_080 Hb_011053_030--Hb_000175_050 Hb_011053_030--Hb_000866_050 Hb_126917_010 Hb_126917_010 Hb_011053_030--Hb_126917_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.54061 22.1703 15.7708 23.0647 3.32598 3.29924
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.73052 6.9334 12.4107 5.19159 69.897

CAGE analysis