Hb_000140_060

Information

Type -
Description -
Location Contig140: 45297-47752
Sequence    

Annotation

kegg
ID rcu:RCOM_1616390
description 50S ribosomal protein L5, putative
nr
ID XP_002511913.1
description 50S ribosomal protein L5, putative [Ricinus communis]
swissprot
ID O04603
description 50S ribosomal protein L5, chloroplastic OS=Arabidopsis thaliana GN=RPL5 PE=2 SV=1
trembl
ID B9RDX4
description 50S ribosomal protein L5, putative OS=Ricinus communis GN=RCOM_1616390 PE=3 SV=1
Gene Ontology
ID GO:0009570
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10811: 45240-47613 , PASA_asmbl_10812: 45178-47613 , PASA_asmbl_10813: 46894-47057
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000140_060 0.0 - - 50S ribosomal protein L5, putative [Ricinus communis]
2 Hb_000069_360 0.1044180387 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003994_080 0.1113672331 - - PREDICTED: uncharacterized protein LOC105634384 [Jatropha curcas]
4 Hb_000422_080 0.1120510808 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
5 Hb_001195_660 0.1123470725 - - metalloendopeptidase, putative [Ricinus communis]
6 Hb_000749_020 0.1151492095 - - Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobroma cacao]
7 Hb_000099_170 0.116979146 - - PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]
8 Hb_008179_030 0.1178208266 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 8 [Jatropha curcas]
9 Hb_005488_130 0.1192669935 - - transporter, putative [Ricinus communis]
10 Hb_004943_040 0.1198747286 - - PREDICTED: BTB/POZ domain-containing protein At1g30440 isoform X1 [Jatropha curcas]
11 Hb_002759_220 0.1199884158 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
12 Hb_004672_020 0.1205148535 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
13 Hb_012799_190 0.1220406056 - - PREDICTED: uncharacterized protein LOC105648490 [Jatropha curcas]
14 Hb_000357_070 0.1223907462 - - -
15 Hb_002374_450 0.1235262968 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
16 Hb_000188_060 0.1245200756 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 4-like [Jatropha curcas]
17 Hb_001628_120 0.1271841643 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
18 Hb_001221_400 0.1273488689 - - PREDICTED: CBS domain-containing protein CBSCBSPB1 [Jatropha curcas]
19 Hb_000227_280 0.1274498674 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]
20 Hb_003226_250 0.1302442787 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000140_060 Hb_000140_060 Hb_000069_360 Hb_000069_360 Hb_000140_060--Hb_000069_360 Hb_003994_080 Hb_003994_080 Hb_000140_060--Hb_003994_080 Hb_000422_080 Hb_000422_080 Hb_000140_060--Hb_000422_080 Hb_001195_660 Hb_001195_660 Hb_000140_060--Hb_001195_660 Hb_000749_020 Hb_000749_020 Hb_000140_060--Hb_000749_020 Hb_000099_170 Hb_000099_170 Hb_000140_060--Hb_000099_170 Hb_000566_010 Hb_000566_010 Hb_000069_360--Hb_000566_010 Hb_000327_200 Hb_000327_200 Hb_000069_360--Hb_000327_200 Hb_000069_360--Hb_003994_080 Hb_003752_090 Hb_003752_090 Hb_000069_360--Hb_003752_090 Hb_003020_250 Hb_003020_250 Hb_000069_360--Hb_003020_250 Hb_003994_080--Hb_003752_090 Hb_005000_080 Hb_005000_080 Hb_003994_080--Hb_005000_080 Hb_001021_210 Hb_001021_210 Hb_003994_080--Hb_001021_210 Hb_138585_030 Hb_138585_030 Hb_003994_080--Hb_138585_030 Hb_000025_540 Hb_000025_540 Hb_003994_080--Hb_000025_540 Hb_010620_050 Hb_010620_050 Hb_003994_080--Hb_010620_050 Hb_004943_040 Hb_004943_040 Hb_000422_080--Hb_004943_040 Hb_000414_080 Hb_000414_080 Hb_000422_080--Hb_000414_080 Hb_000487_370 Hb_000487_370 Hb_000422_080--Hb_000487_370 Hb_000342_170 Hb_000342_170 Hb_000422_080--Hb_000342_170 Hb_000283_140 Hb_000283_140 Hb_000422_080--Hb_000283_140 Hb_002249_080 Hb_002249_080 Hb_000422_080--Hb_002249_080 Hb_003847_040 Hb_003847_040 Hb_001195_660--Hb_003847_040 Hb_026549_070 Hb_026549_070 Hb_001195_660--Hb_026549_070 Hb_001195_660--Hb_000283_140 Hb_009079_050 Hb_009079_050 Hb_001195_660--Hb_009079_050 Hb_003582_090 Hb_003582_090 Hb_001195_660--Hb_003582_090 Hb_000139_300 Hb_000139_300 Hb_001195_660--Hb_000139_300 Hb_002817_040 Hb_002817_040 Hb_000749_020--Hb_002817_040 Hb_000086_210 Hb_000086_210 Hb_000749_020--Hb_000086_210 Hb_000808_150 Hb_000808_150 Hb_000749_020--Hb_000808_150 Hb_002759_120 Hb_002759_120 Hb_000749_020--Hb_002759_120 Hb_005074_040 Hb_005074_040 Hb_000749_020--Hb_005074_040 Hb_007904_060 Hb_007904_060 Hb_000749_020--Hb_007904_060 Hb_071079_020 Hb_071079_020 Hb_000099_170--Hb_071079_020 Hb_000108_150 Hb_000108_150 Hb_000099_170--Hb_000108_150 Hb_002675_080 Hb_002675_080 Hb_000099_170--Hb_002675_080 Hb_000322_030 Hb_000322_030 Hb_000099_170--Hb_000322_030 Hb_005181_120 Hb_005181_120 Hb_000099_170--Hb_005181_120 Hb_000061_250 Hb_000061_250 Hb_000099_170--Hb_000061_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.72643 26.7372 50.4387 63.6959 3.60695 7.52767
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.6073 12.429 11.3387 10.1421 79.1212

CAGE analysis