Hb_004117_370

Information

Type -
Description -
Location Contig4117: 248620-250659
Sequence    

Annotation

kegg
ID tcc:TCM_019731
description ARM repeat superfamily protein, putative
nr
ID XP_012089699.1
description PREDICTED: U-box domain-containing protein 16 [Jatropha curcas]
swissprot
ID Q9LZW3
description U-box domain-containing protein 16 OS=Arabidopsis thaliana GN=PUB16 PE=2 SV=1
trembl
ID A0A067JFW0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00368 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40790: 249183-249712
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004117_370 0.0 - - PREDICTED: U-box domain-containing protein 16 [Jatropha curcas]
2 Hb_012833_010 0.1079323991 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
3 Hb_000107_090 0.1125251896 - - PREDICTED: kinesin KP1 [Jatropha curcas]
4 Hb_004531_170 0.1143548484 - - PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]
5 Hb_000982_100 0.1170481645 transcription factor TF Family: bHLH PREDICTED: transcription factor PIF1-like isoform X1 [Jatropha curcas]
6 Hb_000127_100 0.1195764695 - - PREDICTED: myb-related transcription factor, partner of profilin-like [Populus euphratica]
7 Hb_000167_100 0.1315112314 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_000260_410 0.1334072977 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
9 Hb_000049_280 0.1359126009 - - PREDICTED: ribokinase-like isoform X4 [Jatropha curcas]
10 Hb_008165_050 0.1385653422 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
11 Hb_024066_040 0.1408974478 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
12 Hb_006478_050 0.1414941135 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
13 Hb_002284_160 0.1434852307 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
14 Hb_001141_350 0.1437115133 - - hypothetical protein JCGZ_02174 [Jatropha curcas]
15 Hb_015934_060 0.144538654 - - PREDICTED: mitogen-activated protein kinase 20 [Jatropha curcas]
16 Hb_000181_330 0.1472619898 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
17 Hb_000815_090 0.1499841923 - - PREDICTED: uncharacterized protein LOC105630464 isoform X1 [Jatropha curcas]
18 Hb_060534_010 0.1504826454 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
19 Hb_014720_140 0.1506916746 - - PREDICTED: uncharacterized protein LOC105640367 [Jatropha curcas]
20 Hb_000891_010 0.1510916551 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004117_370 Hb_004117_370 Hb_012833_010 Hb_012833_010 Hb_004117_370--Hb_012833_010 Hb_000107_090 Hb_000107_090 Hb_004117_370--Hb_000107_090 Hb_004531_170 Hb_004531_170 Hb_004117_370--Hb_004531_170 Hb_000982_100 Hb_000982_100 Hb_004117_370--Hb_000982_100 Hb_000127_100 Hb_000127_100 Hb_004117_370--Hb_000127_100 Hb_000167_100 Hb_000167_100 Hb_004117_370--Hb_000167_100 Hb_060534_010 Hb_060534_010 Hb_012833_010--Hb_060534_010 Hb_014720_140 Hb_014720_140 Hb_012833_010--Hb_014720_140 Hb_015934_060 Hb_015934_060 Hb_012833_010--Hb_015934_060 Hb_012833_010--Hb_000982_100 Hb_000313_250 Hb_000313_250 Hb_012833_010--Hb_000313_250 Hb_008165_050 Hb_008165_050 Hb_000107_090--Hb_008165_050 Hb_000272_030 Hb_000272_030 Hb_000107_090--Hb_000272_030 Hb_000260_410 Hb_000260_410 Hb_000107_090--Hb_000260_410 Hb_000787_210 Hb_000787_210 Hb_000107_090--Hb_000787_210 Hb_024066_040 Hb_024066_040 Hb_000107_090--Hb_024066_040 Hb_000622_050 Hb_000622_050 Hb_004531_170--Hb_000622_050 Hb_004531_170--Hb_000982_100 Hb_001936_190 Hb_001936_190 Hb_004531_170--Hb_001936_190 Hb_000012_330 Hb_000012_330 Hb_004531_170--Hb_000012_330 Hb_000181_330 Hb_000181_330 Hb_004531_170--Hb_000181_330 Hb_000645_260 Hb_000645_260 Hb_000982_100--Hb_000645_260 Hb_002244_020 Hb_002244_020 Hb_000982_100--Hb_002244_020 Hb_000982_100--Hb_000127_100 Hb_000486_020 Hb_000486_020 Hb_000982_100--Hb_000486_020 Hb_000002_500 Hb_000002_500 Hb_000127_100--Hb_000002_500 Hb_000116_220 Hb_000116_220 Hb_000127_100--Hb_000116_220 Hb_000618_110 Hb_000618_110 Hb_000127_100--Hb_000618_110 Hb_002818_150 Hb_002818_150 Hb_000127_100--Hb_002818_150 Hb_000031_320 Hb_000031_320 Hb_000167_100--Hb_000031_320 Hb_001777_030 Hb_001777_030 Hb_000167_100--Hb_001777_030 Hb_000186_180 Hb_000186_180 Hb_000167_100--Hb_000186_180 Hb_019863_050 Hb_019863_050 Hb_000167_100--Hb_019863_050 Hb_003654_020 Hb_003654_020 Hb_000167_100--Hb_003654_020 Hb_000815_090 Hb_000815_090 Hb_000167_100--Hb_000815_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.218415 2.67375 5.11407 3.24532 0.264817 0.037294
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.088314 0.0173721 0.0988814 0.179663 5.6939

CAGE analysis