Hb_002818_150

Information

Type transcription factor
Description TF Family: MYB
Location Contig2818: 165857-168102
Sequence    

Annotation

kegg
ID pop:POPTR_0014s10680g
description POPTRDRAFT_572513; hypothetical protein
nr
ID XP_002320929.1
description hypothetical protein POPTR_0014s10680g [Populus trichocarpa]
swissprot
ID Q8LPH6
description Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1
trembl
ID B9I997
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s10680g PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb86

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29501: 165880-167107 , PASA_asmbl_29502: 167112-167962
cDNA
(Sanger)
(ID:Location)		 002_I06.ab1: 167351-167846 , 008_O08.ab1: 167351-167846 , 017_M12.ab1: 167351-167846 , 041_F09.ab1: 167351-167846

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002818_150 0.0 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]
2 Hb_000046_120 0.0933666092 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
3 Hb_000020_090 0.0954531464 - - hypothetical protein JCGZ_09084 [Jatropha curcas]
4 Hb_000002_500 0.0971641701 - - PREDICTED: uncharacterized protein LOC105632094 isoform X1 [Jatropha curcas]
5 Hb_001210_060 0.0990888779 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
6 Hb_005725_240 0.1097286228 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
7 Hb_001942_010 0.1103497825 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
8 Hb_011472_030 0.1117392543 - - PREDICTED: putative serine/threonine-protein kinase [Jatropha curcas]
9 Hb_002702_010 0.1125272073 - - carbohydrate binding protein, putative [Ricinus communis]
10 Hb_084303_010 0.113988464 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000622_050 0.1149941389 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003435_030 0.1162599494 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
13 Hb_000127_100 0.1176644168 - - PREDICTED: myb-related transcription factor, partner of profilin-like [Populus euphratica]
14 Hb_012395_090 0.1181102459 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
15 Hb_018591_020 0.1188053425 - - Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis]
16 Hb_000976_400 0.1189645814 - - synaptotagmin, putative [Ricinus communis]
17 Hb_000329_440 0.1199974855 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
18 Hb_000982_100 0.1200709722 transcription factor TF Family: bHLH PREDICTED: transcription factor PIF1-like isoform X1 [Jatropha curcas]
19 Hb_005337_100 0.1204540208 - - PREDICTED: uncharacterized protein LOC105629349 [Jatropha curcas]
20 Hb_000599_150 0.1213475529 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]

Gene co-expression network

sample Hb_002818_150 Hb_002818_150 Hb_000046_120 Hb_000046_120 Hb_002818_150--Hb_000046_120 Hb_000020_090 Hb_000020_090 Hb_002818_150--Hb_000020_090 Hb_000002_500 Hb_000002_500 Hb_002818_150--Hb_000002_500 Hb_001210_060 Hb_001210_060 Hb_002818_150--Hb_001210_060 Hb_005725_240 Hb_005725_240 Hb_002818_150--Hb_005725_240 Hb_001942_010 Hb_001942_010 Hb_002818_150--Hb_001942_010 Hb_003435_030 Hb_003435_030 Hb_000046_120--Hb_003435_030 Hb_000046_120--Hb_001942_010 Hb_018591_020 Hb_018591_020 Hb_000046_120--Hb_018591_020 Hb_000046_120--Hb_000002_500 Hb_060253_010 Hb_060253_010 Hb_000046_120--Hb_060253_010 Hb_012395_090 Hb_012395_090 Hb_000046_120--Hb_012395_090 Hb_002702_010 Hb_002702_010 Hb_000020_090--Hb_002702_010 Hb_004102_060 Hb_004102_060 Hb_000020_090--Hb_004102_060 Hb_000020_090--Hb_012395_090 Hb_000156_110 Hb_000156_110 Hb_000020_090--Hb_000156_110 Hb_004635_120 Hb_004635_120 Hb_000020_090--Hb_004635_120 Hb_000002_500--Hb_018591_020 Hb_001115_070 Hb_001115_070 Hb_000002_500--Hb_001115_070 Hb_002284_160 Hb_002284_160 Hb_000002_500--Hb_002284_160 Hb_102179_010 Hb_102179_010 Hb_000002_500--Hb_102179_010 Hb_000002_500--Hb_003435_030 Hb_000847_030 Hb_000847_030 Hb_001210_060--Hb_000847_030 Hb_003018_150 Hb_003018_150 Hb_001210_060--Hb_003018_150 Hb_002246_030 Hb_002246_030 Hb_001210_060--Hb_002246_030 Hb_000329_440 Hb_000329_440 Hb_001210_060--Hb_000329_440 Hb_027472_060 Hb_027472_060 Hb_001210_060--Hb_027472_060 Hb_000103_130 Hb_000103_130 Hb_001210_060--Hb_000103_130 Hb_000976_400 Hb_000976_400 Hb_005725_240--Hb_000976_400 Hb_000212_410 Hb_000212_410 Hb_005725_240--Hb_000212_410 Hb_084303_010 Hb_084303_010 Hb_005725_240--Hb_084303_010 Hb_000622_050 Hb_000622_050 Hb_005725_240--Hb_000622_050 Hb_000012_330 Hb_000012_330 Hb_005725_240--Hb_000012_330 Hb_000816_240 Hb_000816_240 Hb_005725_240--Hb_000816_240 Hb_001942_010--Hb_012395_090 Hb_001942_010--Hb_003435_030 Hb_011013_040 Hb_011013_040 Hb_001942_010--Hb_011013_040 Hb_001942_010--Hb_002702_010 Hb_010136_010 Hb_010136_010 Hb_001942_010--Hb_010136_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.844657 7.71845 35.5915 31.8337 0.0481014 0.0360316
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.17881 0.480942 0.554165 1.95385 45.0513

CAGE analysis