Hb_000167_100

Information

Type -
Description -
Location Contig167: 65432-69042
Sequence    

Annotation

kegg
ID rcu:RCOM_1371710
description serine-threonine protein kinase, plant-type, putative (EC:3.1.3.16)
nr
ID XP_002531443.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID B9SZM4
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1371710 PE=4 SV=1
Gene Ontology
ID GO:0016787
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15402: 65467-66679 , PASA_asmbl_15403: 66721-67149 , PASA_asmbl_15404: 67641-68046
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000167_100 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_000031_320 0.1045671056 - - unnamed protein product [Vitis vinifera]
3 Hb_001777_030 0.1057422972 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
4 Hb_000186_180 0.1057958968 - - PREDICTED: uncharacterized protein LOC105649287 [Jatropha curcas]
5 Hb_019863_050 0.1160863119 - - PREDICTED: uncharacterized protein LOC103343426 [Prunus mume]
6 Hb_003654_020 0.1230094961 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
7 Hb_000815_090 0.1269929074 - - PREDICTED: uncharacterized protein LOC105630464 isoform X1 [Jatropha curcas]
8 Hb_002284_160 0.1278302958 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
9 Hb_001677_170 0.1295404467 - - hypothetical protein M569_03661, partial [Genlisea aurea]
10 Hb_000270_250 0.1303183571 transcription factor TF Family: MYB hypothetical protein POPTR_0015s07900g [Populus trichocarpa]
11 Hb_000260_410 0.1306244453 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
12 Hb_004117_370 0.1315112314 - - PREDICTED: U-box domain-containing protein 16 [Jatropha curcas]
13 Hb_006243_010 0.1320102075 - - PREDICTED: cell wall protein IFF6 [Populus euphratica]
14 Hb_011028_030 0.1359038395 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001115_070 0.1361799506 - - RecName: Full=CASP-like protein 2C1; Short=PtCASPL2C1 [Populus trichocarpa]
16 Hb_003073_040 0.1367850815 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.6-like isoform X2 [Populus euphratica]
17 Hb_004880_050 0.1384841233 - - conserved hypothetical protein [Ricinus communis]
18 Hb_046739_010 0.1384924122 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
19 Hb_002211_020 0.1392494115 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
20 Hb_000107_090 0.1411775955 - - PREDICTED: kinesin KP1 [Jatropha curcas]

Gene co-expression network

sample Hb_000167_100 Hb_000167_100 Hb_000031_320 Hb_000031_320 Hb_000167_100--Hb_000031_320 Hb_001777_030 Hb_001777_030 Hb_000167_100--Hb_001777_030 Hb_000186_180 Hb_000186_180 Hb_000167_100--Hb_000186_180 Hb_019863_050 Hb_019863_050 Hb_000167_100--Hb_019863_050 Hb_003654_020 Hb_003654_020 Hb_000167_100--Hb_003654_020 Hb_000815_090 Hb_000815_090 Hb_000167_100--Hb_000815_090 Hb_046739_010 Hb_046739_010 Hb_000031_320--Hb_046739_010 Hb_001677_170 Hb_001677_170 Hb_000031_320--Hb_001677_170 Hb_011028_030 Hb_011028_030 Hb_000031_320--Hb_011028_030 Hb_002407_090 Hb_002407_090 Hb_000031_320--Hb_002407_090 Hb_002818_160 Hb_002818_160 Hb_000031_320--Hb_002818_160 Hb_003970_010 Hb_003970_010 Hb_000031_320--Hb_003970_010 Hb_003767_060 Hb_003767_060 Hb_001777_030--Hb_003767_060 Hb_001777_030--Hb_002818_160 Hb_006106_010 Hb_006106_010 Hb_001777_030--Hb_006106_010 Hb_001777_030--Hb_000031_320 Hb_001777_030--Hb_000186_180 Hb_000186_180--Hb_003654_020 Hb_000186_180--Hb_002818_160 Hb_000186_180--Hb_000031_320 Hb_002307_120 Hb_002307_120 Hb_000186_180--Hb_002307_120 Hb_000186_180--Hb_001677_170 Hb_019863_050--Hb_011028_030 Hb_033363_030 Hb_033363_030 Hb_019863_050--Hb_033363_030 Hb_002211_020 Hb_002211_020 Hb_019863_050--Hb_002211_020 Hb_000072_240 Hb_000072_240 Hb_019863_050--Hb_000072_240 Hb_019863_050--Hb_046739_010 Hb_019863_050--Hb_000031_320 Hb_003209_150 Hb_003209_150 Hb_003654_020--Hb_003209_150 Hb_000732_300 Hb_000732_300 Hb_003654_020--Hb_000732_300 Hb_003654_020--Hb_000031_320 Hb_003654_020--Hb_002307_120 Hb_003654_020--Hb_002818_160 Hb_132840_170 Hb_132840_170 Hb_000815_090--Hb_132840_170 Hb_013394_120 Hb_013394_120 Hb_000815_090--Hb_013394_120 Hb_002284_160 Hb_002284_160 Hb_000815_090--Hb_002284_160 Hb_000002_500 Hb_000002_500 Hb_000815_090--Hb_000002_500 Hb_001115_070 Hb_001115_070 Hb_000815_090--Hb_001115_070 Hb_000818_090 Hb_000818_090 Hb_000815_090--Hb_000818_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.55871 2.00478 1.31141 0.0275486 0.0601711
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0333937 0 0 0.0730172 2.74009

CAGE analysis