Hb_006106_010

Information

Type transcription factor
Description TF Family: TCP
Location Contig6106: 26958-28244
Sequence    

Annotation

kegg
ID rcu:RCOM_0554080
description transcription factor, putative
nr
ID XP_002525139.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q8LPR5
description Transcription factor TCP4 OS=Arabidopsis thaliana GN=TCP4 PE=1 SV=1
trembl
ID B9SGM0
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0554080 PE=4 SV=1
Gene Ontology
ID GO:0007165
description transcription factor tcp4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50987: 26227-28897
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006106_010 0.0 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
2 Hb_003767_060 0.081521056 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
3 Hb_002010_030 0.0942157383 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
4 Hb_004109_140 0.0960154828 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001369_340 0.1011819704 - - Peroxisomal membrane protein 11B [Theobroma cacao]
6 Hb_000483_470 0.1027345783 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like isoform X1 [Jatropha curcas]
7 Hb_005433_020 0.1060108826 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
8 Hb_001777_030 0.1061662902 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
9 Hb_003373_050 0.1065891196 - - receptor protein kinase zmpk1, putative [Ricinus communis]
10 Hb_007462_020 0.1087510161 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
11 Hb_004017_030 0.10967214 - - PREDICTED: 2-hydroxyisoflavanone dehydratase-like [Jatropha curcas]
12 Hb_003777_090 0.1125537282 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
13 Hb_005227_030 0.1184086568 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic [Jatropha curcas]
14 Hb_001953_110 0.1202466972 - - PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]
15 Hb_000834_170 0.1204365397 - - polygalacturonase, putative [Ricinus communis]
16 Hb_000025_700 0.1220946109 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
17 Hb_063405_010 0.1233822729 - - PREDICTED: probable terpene synthase 3 [Jatropha curcas]
18 Hb_000445_270 0.1239841299 - - ATP binding protein, putative [Ricinus communis]
19 Hb_000705_010 0.1247822369 - - hypothetical protein CICLE_v10027296mg [Citrus clementina]
20 Hb_005527_070 0.125301757 - - short-chain dehydrogenase/reductase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_006106_010 Hb_006106_010 Hb_003767_060 Hb_003767_060 Hb_006106_010--Hb_003767_060 Hb_002010_030 Hb_002010_030 Hb_006106_010--Hb_002010_030 Hb_004109_140 Hb_004109_140 Hb_006106_010--Hb_004109_140 Hb_001369_340 Hb_001369_340 Hb_006106_010--Hb_001369_340 Hb_000483_470 Hb_000483_470 Hb_006106_010--Hb_000483_470 Hb_005433_020 Hb_005433_020 Hb_006106_010--Hb_005433_020 Hb_003767_060--Hb_001369_340 Hb_003767_060--Hb_002010_030 Hb_004017_030 Hb_004017_030 Hb_003767_060--Hb_004017_030 Hb_003209_150 Hb_003209_150 Hb_003767_060--Hb_003209_150 Hb_007462_020 Hb_007462_020 Hb_003767_060--Hb_007462_020 Hb_002818_160 Hb_002818_160 Hb_003767_060--Hb_002818_160 Hb_002010_030--Hb_004017_030 Hb_002010_030--Hb_001369_340 Hb_002010_030--Hb_004109_140 Hb_046739_010 Hb_046739_010 Hb_002010_030--Hb_046739_010 Hb_002010_030--Hb_005433_020 Hb_005305_140 Hb_005305_140 Hb_004109_140--Hb_005305_140 Hb_000834_170 Hb_000834_170 Hb_004109_140--Hb_000834_170 Hb_005227_030 Hb_005227_030 Hb_004109_140--Hb_005227_030 Hb_000386_010 Hb_000386_010 Hb_004109_140--Hb_000386_010 Hb_001864_050 Hb_001864_050 Hb_004109_140--Hb_001864_050 Hb_004109_140--Hb_000483_470 Hb_000025_700 Hb_000025_700 Hb_001369_340--Hb_000025_700 Hb_004117_380 Hb_004117_380 Hb_001369_340--Hb_004117_380 Hb_001369_340--Hb_004017_030 Hb_001369_340--Hb_003209_150 Hb_001369_340--Hb_007462_020 Hb_000294_020 Hb_000294_020 Hb_000483_470--Hb_000294_020 Hb_003777_090 Hb_003777_090 Hb_000483_470--Hb_003777_090 Hb_000928_100 Hb_000928_100 Hb_000483_470--Hb_000928_100 Hb_060534_010 Hb_060534_010 Hb_000483_470--Hb_060534_010 Hb_000483_470--Hb_000025_700 Hb_003373_050 Hb_003373_050 Hb_005433_020--Hb_003373_050 Hb_004306_090 Hb_004306_090 Hb_005433_020--Hb_004306_090 Hb_000460_040 Hb_000460_040 Hb_005433_020--Hb_000460_040 Hb_000088_230 Hb_000088_230 Hb_005433_020--Hb_000088_230 Hb_002871_180 Hb_002871_180 Hb_005433_020--Hb_002871_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.758 6.17802 1.35662 0 0.195082
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.117497 6.40551

CAGE analysis