Hb_003373_050

Information

Type -
Description -
Location Contig3373: 59452-61872
Sequence    

Annotation

kegg
ID rcu:RCOM_1157190
description receptor protein kinase zmpk1, putative
nr
ID XP_002529861.1
description receptor protein kinase zmpk1, putative [Ricinus communis]
swissprot
ID P17801
description Putative receptor protein kinase ZmPK1 OS=Zea mays GN=PK1 PE=2 SV=2
trembl
ID B9SV42
description Serine/threonine-protein kinase OS=Ricinus communis GN=RCOM_1157190 PE=3 SV=1
Gene Ontology
ID GO:0004674
description receptor protein kinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35310: 60250-60677
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003373_050 0.0 - - receptor protein kinase zmpk1, putative [Ricinus communis]
2 Hb_005433_020 0.0714033098 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
3 Hb_004306_090 0.0928454149 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
4 Hb_002010_030 0.1020548616 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
5 Hb_003767_060 0.1043833091 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
6 Hb_000460_040 0.1045534785 - - PREDICTED: protein phosphatase 2C 57 [Jatropha curcas]
7 Hb_006106_010 0.1065891196 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
8 Hb_007462_020 0.1076932818 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
9 Hb_060534_010 0.1079920393 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
10 Hb_005527_070 0.1082229018 - - short-chain dehydrogenase/reductase family protein [Populus trichocarpa]
11 Hb_004017_030 0.1082407011 - - PREDICTED: 2-hydroxyisoflavanone dehydratase-like [Jatropha curcas]
12 Hb_000544_070 0.1088911228 - - Peptidyl-prolyl cis-trans isomerase FKBP17-2 [Morus notabilis]
13 Hb_074548_010 0.1090455085 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_010584_020 0.1112315715 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
15 Hb_003494_090 0.1140751367 transcription factor TF Family: MYB myb family transcription factor family protein [Populus trichocarpa]
16 Hb_000120_490 0.1157669523 - - PREDICTED: MORC family CW-type zinc finger protein 3-like [Jatropha curcas]
17 Hb_000116_220 0.1161328374 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000483_470 0.1165506499 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like isoform X1 [Jatropha curcas]
19 Hb_001369_340 0.1173431292 - - Peroxisomal membrane protein 11B [Theobroma cacao]
20 Hb_002007_220 0.1178965652 - - PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003373_050 Hb_003373_050 Hb_005433_020 Hb_005433_020 Hb_003373_050--Hb_005433_020 Hb_004306_090 Hb_004306_090 Hb_003373_050--Hb_004306_090 Hb_002010_030 Hb_002010_030 Hb_003373_050--Hb_002010_030 Hb_003767_060 Hb_003767_060 Hb_003373_050--Hb_003767_060 Hb_000460_040 Hb_000460_040 Hb_003373_050--Hb_000460_040 Hb_006106_010 Hb_006106_010 Hb_003373_050--Hb_006106_010 Hb_005433_020--Hb_004306_090 Hb_005433_020--Hb_000460_040 Hb_000088_230 Hb_000088_230 Hb_005433_020--Hb_000088_230 Hb_005433_020--Hb_002010_030 Hb_002871_180 Hb_002871_180 Hb_005433_020--Hb_002871_180 Hb_005211_080 Hb_005211_080 Hb_004306_090--Hb_005211_080 Hb_005329_010 Hb_005329_010 Hb_004306_090--Hb_005329_010 Hb_000544_070 Hb_000544_070 Hb_004306_090--Hb_000544_070 Hb_004306_090--Hb_000460_040 Hb_001006_150 Hb_001006_150 Hb_004306_090--Hb_001006_150 Hb_002010_030--Hb_003767_060 Hb_004017_030 Hb_004017_030 Hb_002010_030--Hb_004017_030 Hb_001369_340 Hb_001369_340 Hb_002010_030--Hb_001369_340 Hb_004109_140 Hb_004109_140 Hb_002010_030--Hb_004109_140 Hb_046739_010 Hb_046739_010 Hb_002010_030--Hb_046739_010 Hb_003767_060--Hb_001369_340 Hb_003767_060--Hb_004017_030 Hb_003209_150 Hb_003209_150 Hb_003767_060--Hb_003209_150 Hb_007462_020 Hb_007462_020 Hb_003767_060--Hb_007462_020 Hb_002818_160 Hb_002818_160 Hb_003767_060--Hb_002818_160 Hb_000460_040--Hb_000088_230 Hb_000460_040--Hb_005329_010 Hb_001699_140 Hb_001699_140 Hb_000460_040--Hb_001699_140 Hb_007477_060 Hb_007477_060 Hb_000460_040--Hb_007477_060 Hb_003494_090 Hb_003494_090 Hb_000460_040--Hb_003494_090 Hb_000460_040--Hb_005211_080 Hb_006106_010--Hb_003767_060 Hb_006106_010--Hb_002010_030 Hb_006106_010--Hb_004109_140 Hb_006106_010--Hb_001369_340 Hb_000483_470 Hb_000483_470 Hb_006106_010--Hb_000483_470 Hb_006106_010--Hb_005433_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0422224 0.998288 3.58591 1.17442 0.0614019 0.0802839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.018296 0.0143968 0.027427 0.0800572 4.5869

CAGE analysis