Hb_005288_180

Information

Type -
Description -
Location Contig5288: 111090-112841
Sequence    

Annotation

kegg
ID rcu:RCOM_0609420
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012089334.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9SR00
description Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2 SV=1
trembl
ID A0A067JIP8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23550 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47201: 110945-113342
cDNA
(Sanger)
(ID:Location)		 007_J24.ab1: 110948-111747 , 009_E01.ab1: 110945-111642

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005288_180 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_005015_020 0.1022091269 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
3 Hb_004346_040 0.1093486954 - - hypothetical protein POPTR_0016s06630g [Populus trichocarpa]
4 Hb_004324_120 0.1109176461 - - ATP-dependent zinc metalloprotease YME1L1 [Gossypium arboreum]
5 Hb_001250_020 0.1259571917 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
6 Hb_003929_220 0.1279763483 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_002928_030 0.1288945983 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
8 Hb_140389_010 0.1303121951 - - Ran GTPase binding protein, putative [Ricinus communis]
9 Hb_000093_140 0.1348804165 - - PREDICTED: fructokinase-like 2, chloroplastic [Jatropha curcas]
10 Hb_000069_500 0.1370507191 - - PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Jatropha curcas]
11 Hb_000906_070 0.1395798929 - - PREDICTED: protein SCAR2-like isoform X1 [Jatropha curcas]
12 Hb_004837_210 0.1412406238 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
13 Hb_000042_050 0.1426648163 - - PREDICTED: uncharacterized protein LOC105632791 isoform X1 [Jatropha curcas]
14 Hb_007982_040 0.1441972192 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
15 Hb_000537_070 0.1444218787 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
16 Hb_001689_050 0.1454190999 - - PREDICTED: cytochrome P450 CYP749A22-like [Prunus mume]
17 Hb_148146_010 0.1463635218 - - coproporphyrinogen III oxidase [Ziziphus jujuba]
18 Hb_000516_080 0.1466097895 - - hypothetical protein POPTR_0010s24810g [Populus trichocarpa]
19 Hb_005074_050 0.1482085881 - - PREDICTED: myosin-6-like [Jatropha curcas]
20 Hb_005914_210 0.1493180024 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]

Gene co-expression network

sample Hb_005288_180 Hb_005288_180 Hb_005015_020 Hb_005015_020 Hb_005288_180--Hb_005015_020 Hb_004346_040 Hb_004346_040 Hb_005288_180--Hb_004346_040 Hb_004324_120 Hb_004324_120 Hb_005288_180--Hb_004324_120 Hb_001250_020 Hb_001250_020 Hb_005288_180--Hb_001250_020 Hb_003929_220 Hb_003929_220 Hb_005288_180--Hb_003929_220 Hb_002928_030 Hb_002928_030 Hb_005288_180--Hb_002928_030 Hb_005015_020--Hb_004324_120 Hb_005015_020--Hb_004346_040 Hb_012539_040 Hb_012539_040 Hb_005015_020--Hb_012539_040 Hb_000446_040 Hb_000446_040 Hb_005015_020--Hb_000446_040 Hb_002799_130 Hb_002799_130 Hb_005015_020--Hb_002799_130 Hb_000093_140 Hb_000093_140 Hb_004346_040--Hb_000093_140 Hb_000906_070 Hb_000906_070 Hb_004346_040--Hb_000906_070 Hb_013968_010 Hb_013968_010 Hb_004346_040--Hb_013968_010 Hb_004346_040--Hb_004324_120 Hb_002447_050 Hb_002447_050 Hb_004346_040--Hb_002447_050 Hb_004324_120--Hb_012539_040 Hb_137600_010 Hb_137600_010 Hb_004324_120--Hb_137600_010 Hb_004324_120--Hb_000446_040 Hb_018043_020 Hb_018043_020 Hb_001250_020--Hb_018043_020 Hb_008616_040 Hb_008616_040 Hb_001250_020--Hb_008616_040 Hb_003029_140 Hb_003029_140 Hb_001250_020--Hb_003029_140 Hb_001109_160 Hb_001109_160 Hb_001250_020--Hb_001109_160 Hb_000762_110 Hb_000762_110 Hb_001250_020--Hb_000762_110 Hb_010984_010 Hb_010984_010 Hb_001250_020--Hb_010984_010 Hb_000997_140 Hb_000997_140 Hb_003929_220--Hb_000997_140 Hb_000771_170 Hb_000771_170 Hb_003929_220--Hb_000771_170 Hb_028707_110 Hb_028707_110 Hb_003929_220--Hb_028707_110 Hb_001408_030 Hb_001408_030 Hb_003929_220--Hb_001408_030 Hb_001472_160 Hb_001472_160 Hb_003929_220--Hb_001472_160 Hb_001437_120 Hb_001437_120 Hb_003929_220--Hb_001437_120 Hb_001649_030 Hb_001649_030 Hb_002928_030--Hb_001649_030 Hb_000358_040 Hb_000358_040 Hb_002928_030--Hb_000358_040 Hb_004629_030 Hb_004629_030 Hb_002928_030--Hb_004629_030 Hb_003376_390 Hb_003376_390 Hb_002928_030--Hb_003376_390 Hb_025194_090 Hb_025194_090 Hb_002928_030--Hb_025194_090 Hb_004871_010 Hb_004871_010 Hb_002928_030--Hb_004871_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.09865 8.45489 15.1866 5.80191 2.36064 3.00892
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.915875 0.597067 2.25571 2.33764 24.1335

CAGE analysis