Hb_002799_130

Information

Type -
Description -
Location Contig2799: 237117-240771
Sequence    

Annotation

kegg
ID rcu:RCOM_0977470
description hypothetical protein
nr
ID XP_012077726.1
description PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]
swissprot
ID G5DBJ0
description Protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic OS=Nicotiana benthamiana GN=CPP1 PE=1 SV=1
trembl
ID A0A067KAQ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13083 PE=4 SV=1
Gene Ontology
ID GO:0016020
description PREDICTED: uncharacterized protein LOC105638514

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29160: 237131-240734 , PASA_asmbl_29161: 239415-239608
cDNA
(Sanger)
(ID:Location)		 031_M19.ab1: 237138-237296

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002799_130 0.0 - - PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]
2 Hb_005015_020 0.1168821183 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
3 Hb_000933_110 0.118699657 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
4 Hb_002928_030 0.1218787049 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
5 Hb_003376_390 0.128534873 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]
6 Hb_003929_220 0.1288998886 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_004324_120 0.1289233075 - - ATP-dependent zinc metalloprotease YME1L1 [Gossypium arboreum]
8 Hb_000331_340 0.1378161219 - - PREDICTED: uncharacterized protein LOC105640234 [Jatropha curcas]
9 Hb_004871_010 0.1459600051 - - RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
10 Hb_004346_040 0.1492155921 - - hypothetical protein POPTR_0016s06630g [Populus trichocarpa]
11 Hb_001828_120 0.1498812893 - - PREDICTED: uncharacterized protein LOC105140167 [Populus euphratica]
12 Hb_000212_370 0.1516392207 - - thioredoxin f-type, putative [Ricinus communis]
13 Hb_005288_180 0.1517755293 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_148146_010 0.1517998363 - - coproporphyrinogen III oxidase [Ziziphus jujuba]
15 Hb_027445_100 0.1525318077 - - PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]
16 Hb_003529_140 0.1555086589 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
17 Hb_003734_080 0.1579806545 - - myosin vIII, putative [Ricinus communis]
18 Hb_000446_040 0.1580765788 - - PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
19 Hb_000548_060 0.1593035571 - - PREDICTED: fruit protein pKIWI502 [Jatropha curcas]
20 Hb_011476_030 0.159523601 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]

Gene co-expression network

sample Hb_002799_130 Hb_002799_130 Hb_005015_020 Hb_005015_020 Hb_002799_130--Hb_005015_020 Hb_000933_110 Hb_000933_110 Hb_002799_130--Hb_000933_110 Hb_002928_030 Hb_002928_030 Hb_002799_130--Hb_002928_030 Hb_003376_390 Hb_003376_390 Hb_002799_130--Hb_003376_390 Hb_003929_220 Hb_003929_220 Hb_002799_130--Hb_003929_220 Hb_004324_120 Hb_004324_120 Hb_002799_130--Hb_004324_120 Hb_005015_020--Hb_004324_120 Hb_004346_040 Hb_004346_040 Hb_005015_020--Hb_004346_040 Hb_005288_180 Hb_005288_180 Hb_005015_020--Hb_005288_180 Hb_012539_040 Hb_012539_040 Hb_005015_020--Hb_012539_040 Hb_000446_040 Hb_000446_040 Hb_005015_020--Hb_000446_040 Hb_004223_270 Hb_004223_270 Hb_000933_110--Hb_004223_270 Hb_000334_050 Hb_000334_050 Hb_000933_110--Hb_000334_050 Hb_000260_160 Hb_000260_160 Hb_000933_110--Hb_000260_160 Hb_000933_110--Hb_000446_040 Hb_000933_110--Hb_004346_040 Hb_027445_100 Hb_027445_100 Hb_000933_110--Hb_027445_100 Hb_001649_030 Hb_001649_030 Hb_002928_030--Hb_001649_030 Hb_000358_040 Hb_000358_040 Hb_002928_030--Hb_000358_040 Hb_004629_030 Hb_004629_030 Hb_002928_030--Hb_004629_030 Hb_002928_030--Hb_003376_390 Hb_025194_090 Hb_025194_090 Hb_002928_030--Hb_025194_090 Hb_004871_010 Hb_004871_010 Hb_002928_030--Hb_004871_010 Hb_003376_390--Hb_004871_010 Hb_003376_390--Hb_001649_030 Hb_172632_060 Hb_172632_060 Hb_003376_390--Hb_172632_060 Hb_003376_390--Hb_000358_040 Hb_000574_470 Hb_000574_470 Hb_003376_390--Hb_000574_470 Hb_000997_140 Hb_000997_140 Hb_003929_220--Hb_000997_140 Hb_000771_170 Hb_000771_170 Hb_003929_220--Hb_000771_170 Hb_028707_110 Hb_028707_110 Hb_003929_220--Hb_028707_110 Hb_001408_030 Hb_001408_030 Hb_003929_220--Hb_001408_030 Hb_001472_160 Hb_001472_160 Hb_003929_220--Hb_001472_160 Hb_001437_120 Hb_001437_120 Hb_003929_220--Hb_001437_120 Hb_004324_120--Hb_012539_040 Hb_004324_120--Hb_004346_040 Hb_004324_120--Hb_005288_180 Hb_137600_010 Hb_137600_010 Hb_004324_120--Hb_137600_010 Hb_004324_120--Hb_000446_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.63802 17.7131 29.4017 5.51943 7.11336 3.06776
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.39493 5.26737 4.53075 4.47939 35.3386

CAGE analysis