Hb_006717_010

Information

Type -
Description -
Location Contig6717: 13597-14250
Sequence    

Annotation

kegg
ID pop:POPTR_0021s00760g
description hypothetical protein
nr
ID XP_012091349.1
description PREDICTED: uncharacterized protein LOC105649338 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JAH7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21223 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53456: 13452-14534
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006717_010 0.0 - - PREDICTED: uncharacterized protein LOC105649338 [Jatropha curcas]
2 Hb_001195_250 0.1275038665 - - lrr receptor protein kinase, putative [Ricinus communis]
3 Hb_000567_240 0.1392374359 - - PREDICTED: F-box/LRR-repeat MAX2 homolog A-like [Jatropha curcas]
4 Hb_000103_410 0.1425834131 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
5 Hb_002006_060 0.1425879613 - - PREDICTED: oleosin 1-like [Jatropha curcas]
6 Hb_000589_420 0.1467462109 - - PREDICTED: uncharacterized protein LOC105647273 [Jatropha curcas]
7 Hb_001948_090 0.1483933421 transcription factor TF Family: GRAS hypothetical protein POPTR_0005s14540g [Populus trichocarpa]
8 Hb_000230_470 0.1509168473 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
9 Hb_003579_010 0.1605452142 - - cryptochrome 1.2 [Populus tremula]
10 Hb_000320_270 0.1651293733 - - PREDICTED: 5'-adenylylsulfate reductase 1, chloroplastic [Jatropha curcas]
11 Hb_002073_090 0.1654406592 - - PREDICTED: copper transporter 6-like [Jatropha curcas]
12 Hb_006618_020 0.1667066023 - - Vacuolar-processing enzyme precursor [Ricinus communis]
13 Hb_167775_010 0.1692176832 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
14 Hb_001147_030 0.1694683278 - - hypothetical protein JCGZ_14809 [Jatropha curcas]
15 Hb_000753_120 0.1716610489 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
16 Hb_003912_080 0.1726260056 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
17 Hb_000042_060 0.1737275196 - - PREDICTED: uncharacterized protein LOC105632794 [Jatropha curcas]
18 Hb_003106_240 0.1751567484 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
19 Hb_001141_060 0.1754500656 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
20 Hb_004013_020 0.1780587301 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]

Gene co-expression network

sample Hb_006717_010 Hb_006717_010 Hb_001195_250 Hb_001195_250 Hb_006717_010--Hb_001195_250 Hb_000567_240 Hb_000567_240 Hb_006717_010--Hb_000567_240 Hb_000103_410 Hb_000103_410 Hb_006717_010--Hb_000103_410 Hb_002006_060 Hb_002006_060 Hb_006717_010--Hb_002006_060 Hb_000589_420 Hb_000589_420 Hb_006717_010--Hb_000589_420 Hb_001948_090 Hb_001948_090 Hb_006717_010--Hb_001948_090 Hb_001195_250--Hb_000103_410 Hb_000753_150 Hb_000753_150 Hb_001195_250--Hb_000753_150 Hb_003177_090 Hb_003177_090 Hb_001195_250--Hb_003177_090 Hb_001269_520 Hb_001269_520 Hb_001195_250--Hb_001269_520 Hb_000251_050 Hb_000251_050 Hb_001195_250--Hb_000251_050 Hb_000567_240--Hb_000589_420 Hb_004013_020 Hb_004013_020 Hb_000567_240--Hb_004013_020 Hb_000307_010 Hb_000307_010 Hb_000567_240--Hb_000307_010 Hb_000065_090 Hb_000065_090 Hb_000567_240--Hb_000065_090 Hb_000753_120 Hb_000753_120 Hb_000567_240--Hb_000753_120 Hb_001689_030 Hb_001689_030 Hb_000103_410--Hb_001689_030 Hb_002344_080 Hb_002344_080 Hb_000103_410--Hb_002344_080 Hb_000103_410--Hb_003177_090 Hb_025045_010 Hb_025045_010 Hb_000103_410--Hb_025045_010 Hb_002809_120 Hb_002809_120 Hb_000103_410--Hb_002809_120 Hb_006618_020 Hb_006618_020 Hb_002006_060--Hb_006618_020 Hb_002006_060--Hb_001948_090 Hb_005155_010 Hb_005155_010 Hb_002006_060--Hb_005155_010 Hb_061908_020 Hb_061908_020 Hb_002006_060--Hb_061908_020 Hb_172676_010 Hb_172676_010 Hb_002006_060--Hb_172676_010 Hb_000556_070 Hb_000556_070 Hb_000589_420--Hb_000556_070 Hb_167775_010 Hb_167775_010 Hb_000589_420--Hb_167775_010 Hb_000321_120 Hb_000321_120 Hb_000589_420--Hb_000321_120 Hb_003912_080 Hb_003912_080 Hb_000589_420--Hb_003912_080 Hb_001141_060 Hb_001141_060 Hb_001948_090--Hb_001141_060 Hb_000320_270 Hb_000320_270 Hb_001948_090--Hb_000320_270 Hb_001948_090--Hb_003912_080 Hb_000230_470 Hb_000230_470 Hb_001948_090--Hb_000230_470 Hb_005408_100 Hb_005408_100 Hb_001948_090--Hb_005408_100 Hb_001948_090--Hb_000753_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.85439 37.8517 16.2081 26.0046 2.01231 1.8721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.356194 0.34998 0.619394 4.54268 33.3422

CAGE analysis