Hb_004013_020

Information

Type -
Description -
Location Contig4013: 22807-24348
Sequence    

Annotation

kegg
ID rcu:RCOM_1153060
description skip-2, putative
nr
ID XP_012079304.1
description PREDICTED: F-box protein SKIP2 [Jatropha curcas]
swissprot
ID Q9FE83
description F-box protein SKIP2 OS=Arabidopsis thaliana GN=SKIP2 PE=1 SV=1
trembl
ID A0A067KI89
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12451 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004013_020 0.0 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]
2 Hb_000753_120 0.107690612 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
3 Hb_000975_370 0.116074633 transcription factor TF Family: MYB PREDICTED: transcription factor MYB59 isoform X1 [Jatropha curcas]
4 Hb_000836_600 0.1181985486 - - PREDICTED: delta(8)-fatty-acid desaturase 2 [Jatropha curcas]
5 Hb_000230_470 0.1266240648 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
6 Hb_000065_090 0.1321607204 - - potassium channel tetramerization domain-containing protein, putative [Ricinus communis]
7 Hb_001541_160 0.1337613704 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
8 Hb_143766_030 0.1473540327 - - protein with unknown function [Ricinus communis]
9 Hb_000567_240 0.148305397 - - PREDICTED: F-box/LRR-repeat MAX2 homolog A-like [Jatropha curcas]
10 Hb_001133_010 0.1486889628 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000836_210 0.1520738098 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
12 Hb_002004_010 0.1528516337 - - CBL-interacting protein kinase 9 [Populus trichocarpa]
13 Hb_036568_010 0.1534284259 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 23 [Jatropha curcas]
14 Hb_000307_010 0.1538826893 - - PREDICTED: ganglioside-induced differentiation-associated protein 2-like [Jatropha curcas]
15 Hb_002973_030 0.1542345216 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
16 Hb_007850_010 0.1545852539 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.4 [Jatropha curcas]
17 Hb_001898_020 0.154805708 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
18 Hb_031089_050 0.1550372315 - - kinase, putative [Ricinus communis]
19 Hb_000200_170 0.1558471273 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]
20 Hb_002909_100 0.1582131679 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]

Gene co-expression network

sample Hb_004013_020 Hb_004013_020 Hb_000753_120 Hb_000753_120 Hb_004013_020--Hb_000753_120 Hb_000975_370 Hb_000975_370 Hb_004013_020--Hb_000975_370 Hb_000836_600 Hb_000836_600 Hb_004013_020--Hb_000836_600 Hb_000230_470 Hb_000230_470 Hb_004013_020--Hb_000230_470 Hb_000065_090 Hb_000065_090 Hb_004013_020--Hb_000065_090 Hb_001541_160 Hb_001541_160 Hb_004013_020--Hb_001541_160 Hb_000753_120--Hb_000230_470 Hb_002909_100 Hb_002909_100 Hb_000753_120--Hb_002909_100 Hb_005408_100 Hb_005408_100 Hb_000753_120--Hb_005408_100 Hb_031089_050 Hb_031089_050 Hb_000753_120--Hb_031089_050 Hb_001948_090 Hb_001948_090 Hb_000753_120--Hb_001948_090 Hb_000975_370--Hb_001541_160 Hb_000975_370--Hb_000753_120 Hb_000975_370--Hb_000065_090 Hb_002973_030 Hb_002973_030 Hb_000975_370--Hb_002973_030 Hb_002004_010 Hb_002004_010 Hb_000975_370--Hb_002004_010 Hb_001133_010 Hb_001133_010 Hb_000836_600--Hb_001133_010 Hb_000200_170 Hb_000200_170 Hb_000836_600--Hb_000200_170 Hb_143766_030 Hb_143766_030 Hb_000836_600--Hb_143766_030 Hb_002876_250 Hb_002876_250 Hb_000836_600--Hb_002876_250 Hb_002849_070 Hb_002849_070 Hb_000836_600--Hb_002849_070 Hb_000230_470--Hb_005408_100 Hb_000230_470--Hb_002909_100 Hb_003912_080 Hb_003912_080 Hb_000230_470--Hb_003912_080 Hb_000320_270 Hb_000320_270 Hb_000230_470--Hb_000320_270 Hb_002686_210 Hb_002686_210 Hb_000230_470--Hb_002686_210 Hb_004116_180 Hb_004116_180 Hb_000065_090--Hb_004116_180 Hb_000307_010 Hb_000307_010 Hb_000065_090--Hb_000307_010 Hb_033152_100 Hb_033152_100 Hb_000065_090--Hb_033152_100 Hb_000221_090 Hb_000221_090 Hb_000065_090--Hb_000221_090 Hb_000065_090--Hb_001133_010 Hb_001541_160--Hb_002004_010 Hb_000836_210 Hb_000836_210 Hb_001541_160--Hb_000836_210 Hb_002849_110 Hb_002849_110 Hb_001541_160--Hb_002849_110 Hb_050847_030 Hb_050847_030 Hb_001541_160--Hb_050847_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.52712 41.4307 8.62242 29.492 3.29759 3.274
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.45056 2.33258 2.82022 6.38212 21.9844

CAGE analysis