Hb_000221_090

Information

Type transcription factor
Description TF Family: HB
Location Contig221: 110836-112584
Sequence    

Annotation

kegg
ID rcu:RCOM_1037430
description homeobox protein, putative
nr
ID XP_012067920.1
description PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
swissprot
ID Q940J1
description Homeobox-leucine zipper protein ATHB-16 OS=Arabidopsis thaliana GN=ATHB-16 PE=2 SV=2
trembl
ID A0A067KYZ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15828 PE=4 SV=1
Gene Ontology
ID GO:0003677
description homeobox-leucine zipper protein athb-6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22769: 110853-112374
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000221_090 0.0 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
2 Hb_000065_090 0.1490242152 - - potassium channel tetramerization domain-containing protein, putative [Ricinus communis]
3 Hb_000370_070 0.1791586838 - - PREDICTED: subtilisin-like protease-like [Citrus sinensis]
4 Hb_004013_020 0.1946073345 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]
5 Hb_000797_060 0.1951085164 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
6 Hb_002289_150 0.1973477315 - - PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Jatropha curcas]
7 Hb_000579_030 0.1977044701 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 3 [Jatropha curcas]
8 Hb_000138_060 0.2002313217 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
9 Hb_116702_010 0.2048060928 - - Leucine-rich repeat protein kinase family protein [Theobroma cacao]
10 Hb_000975_370 0.2086379537 transcription factor TF Family: MYB PREDICTED: transcription factor MYB59 isoform X1 [Jatropha curcas]
11 Hb_001140_170 0.2089057979 - - PREDICTED: remorin [Jatropha curcas]
12 Hb_010417_130 0.2092344754 - - PREDICTED: probable membrane-associated kinase regulator 2 [Jatropha curcas]
13 Hb_004116_180 0.2143257306 - - PREDICTED: uncharacterized protein LOC105646147 [Jatropha curcas]
14 Hb_000413_020 0.2163535307 - - PREDICTED: U-box domain-containing protein 8 [Jatropha curcas]
15 Hb_031089_050 0.2168915197 - - kinase, putative [Ricinus communis]
16 Hb_017434_070 0.2174864486 - - transcription factor, putative [Ricinus communis]
17 Hb_020805_120 0.2205105375 - - PREDICTED: glutamate receptor 3.3 [Jatropha curcas]
18 Hb_005489_150 0.2258453361 - - hypothetical protein JCGZ_20759 [Jatropha curcas]
19 Hb_030565_050 0.2269859861 - - UDP-D-GLUCURONATE 4-EPIMERASE 6 family protein [Populus trichocarpa]
20 Hb_000042_060 0.2270052954 - - PREDICTED: uncharacterized protein LOC105632794 [Jatropha curcas]

Gene co-expression network

sample Hb_000221_090 Hb_000221_090 Hb_000065_090 Hb_000065_090 Hb_000221_090--Hb_000065_090 Hb_000370_070 Hb_000370_070 Hb_000221_090--Hb_000370_070 Hb_004013_020 Hb_004013_020 Hb_000221_090--Hb_004013_020 Hb_000797_060 Hb_000797_060 Hb_000221_090--Hb_000797_060 Hb_002289_150 Hb_002289_150 Hb_000221_090--Hb_002289_150 Hb_000579_030 Hb_000579_030 Hb_000221_090--Hb_000579_030 Hb_000065_090--Hb_004013_020 Hb_004116_180 Hb_004116_180 Hb_000065_090--Hb_004116_180 Hb_000307_010 Hb_000307_010 Hb_000065_090--Hb_000307_010 Hb_033152_100 Hb_033152_100 Hb_000065_090--Hb_033152_100 Hb_001133_010 Hb_001133_010 Hb_000065_090--Hb_001133_010 Hb_000138_060 Hb_000138_060 Hb_000370_070--Hb_000138_060 Hb_116702_010 Hb_116702_010 Hb_000370_070--Hb_116702_010 Hb_000236_160 Hb_000236_160 Hb_000370_070--Hb_000236_160 Hb_028207_060 Hb_028207_060 Hb_000370_070--Hb_028207_060 Hb_007793_050 Hb_007793_050 Hb_000370_070--Hb_007793_050 Hb_000753_120 Hb_000753_120 Hb_004013_020--Hb_000753_120 Hb_000975_370 Hb_000975_370 Hb_004013_020--Hb_000975_370 Hb_000836_600 Hb_000836_600 Hb_004013_020--Hb_000836_600 Hb_000230_470 Hb_000230_470 Hb_004013_020--Hb_000230_470 Hb_001541_160 Hb_001541_160 Hb_004013_020--Hb_001541_160 Hb_000300_230 Hb_000300_230 Hb_000797_060--Hb_000300_230 Hb_000797_060--Hb_002289_150 Hb_001754_060 Hb_001754_060 Hb_000797_060--Hb_001754_060 Hb_000109_190 Hb_000109_190 Hb_000797_060--Hb_000109_190 Hb_000797_060--Hb_000138_060 Hb_005489_150 Hb_005489_150 Hb_000797_060--Hb_005489_150 Hb_002289_150--Hb_000138_060 Hb_002289_150--Hb_001754_060 Hb_002289_150--Hb_000300_230 Hb_011828_010 Hb_011828_010 Hb_002289_150--Hb_011828_010 Hb_026740_020 Hb_026740_020 Hb_002289_150--Hb_026740_020 Hb_000579_030--Hb_004116_180 Hb_001269_050 Hb_001269_050 Hb_000579_030--Hb_001269_050 Hb_000473_120 Hb_000473_120 Hb_000579_030--Hb_000473_120 Hb_000492_080 Hb_000492_080 Hb_000579_030--Hb_000492_080 Hb_023765_010 Hb_023765_010 Hb_000579_030--Hb_023765_010 Hb_001446_060 Hb_001446_060 Hb_000579_030--Hb_001446_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3559 21.6349 2.93919 33.1163 3.09885 1.98276
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.34138 3.25267 1.09167 3.45542 23.3832

CAGE analysis