Hb_000236_160

Information

Type -
Description -
Location Contig236: 158522-159892
Sequence    

Annotation

kegg
ID pop:POPTR_0001s32730g
description POPTRDRAFT_815626; UDP-D-GLUCURONATE 4-EPIMERASE 6 family protein
nr
ID XP_012071089.1
description PREDICTED: UDP-glucuronate 4-epimerase 6 [Jatropha curcas]
swissprot
ID Q9LIS3
description UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1 SV=1
trembl
ID A0A067KSZ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01088 PE=4 SV=1
Gene Ontology
ID GO:0005768
description udp-glucuronate 4-epimerase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24677: 157975-160021
cDNA
(Sanger)
(ID:Location)		 023_H19.ab1: 158482-159242

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_160 0.0 - - PREDICTED: UDP-glucuronate 4-epimerase 6 [Jatropha curcas]
2 Hb_000684_220 0.1458782908 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_002774_120 0.1543559064 - - PREDICTED: uncharacterized protein LOC105630593 [Jatropha curcas]
4 Hb_003929_190 0.15688635 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
5 Hb_000012_400 0.1634705632 - - PREDICTED: K(+) efflux antiporter 6 [Jatropha curcas]
6 Hb_010812_110 0.1656800474 - - putative plant disease resistance family protein [Populus trichocarpa]
7 Hb_030565_050 0.1681976932 - - UDP-D-GLUCURONATE 4-EPIMERASE 6 family protein [Populus trichocarpa]
8 Hb_005941_030 0.169168711 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
9 Hb_020586_010 0.1719968364 - - Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis]
10 Hb_000363_260 0.1730119025 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
11 Hb_014497_040 0.1756869303 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
12 Hb_001195_090 0.1795654368 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
13 Hb_001847_050 0.1802436569 - - hypothetical protein CISIN_1g019843mg [Citrus sinensis]
14 Hb_000138_060 0.1825113464 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
15 Hb_002687_020 0.1837294566 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000226_070 0.1850977203 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
17 Hb_000370_070 0.1859623939 - - PREDICTED: subtilisin-like protease-like [Citrus sinensis]
18 Hb_014361_090 0.1864802812 - - acyl-CoA binding protein 3A [Vernicia fordii]
19 Hb_000330_020 0.1881515961 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
20 Hb_001005_200 0.1896756235 - - PREDICTED: receptor-like protein kinase HERK 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000236_160 Hb_000236_160 Hb_000684_220 Hb_000684_220 Hb_000236_160--Hb_000684_220 Hb_002774_120 Hb_002774_120 Hb_000236_160--Hb_002774_120 Hb_003929_190 Hb_003929_190 Hb_000236_160--Hb_003929_190 Hb_000012_400 Hb_000012_400 Hb_000236_160--Hb_000012_400 Hb_010812_110 Hb_010812_110 Hb_000236_160--Hb_010812_110 Hb_030565_050 Hb_030565_050 Hb_000236_160--Hb_030565_050 Hb_000684_220--Hb_030565_050 Hb_000684_220--Hb_002774_120 Hb_000246_130 Hb_000246_130 Hb_000684_220--Hb_000246_130 Hb_000330_020 Hb_000330_020 Hb_000684_220--Hb_000330_020 Hb_000603_020 Hb_000603_020 Hb_000684_220--Hb_000603_020 Hb_000363_260 Hb_000363_260 Hb_002774_120--Hb_000363_260 Hb_006570_090 Hb_006570_090 Hb_002774_120--Hb_006570_090 Hb_002774_120--Hb_003929_190 Hb_179960_010 Hb_179960_010 Hb_002774_120--Hb_179960_010 Hb_003540_120 Hb_003540_120 Hb_002774_120--Hb_003540_120 Hb_003929_190--Hb_000012_400 Hb_002539_050 Hb_002539_050 Hb_003929_190--Hb_002539_050 Hb_003029_060 Hb_003029_060 Hb_003929_190--Hb_003029_060 Hb_005941_030 Hb_005941_030 Hb_003929_190--Hb_005941_030 Hb_000071_160 Hb_000071_160 Hb_003929_190--Hb_000071_160 Hb_000203_070 Hb_000203_070 Hb_003929_190--Hb_000203_070 Hb_003849_120 Hb_003849_120 Hb_000012_400--Hb_003849_120 Hb_010050_020 Hb_010050_020 Hb_000012_400--Hb_010050_020 Hb_010407_030 Hb_010407_030 Hb_000012_400--Hb_010407_030 Hb_000562_100 Hb_000562_100 Hb_000012_400--Hb_000562_100 Hb_001195_310 Hb_001195_310 Hb_000012_400--Hb_001195_310 Hb_001009_150 Hb_001009_150 Hb_000012_400--Hb_001009_150 Hb_001474_040 Hb_001474_040 Hb_010812_110--Hb_001474_040 Hb_000844_030 Hb_000844_030 Hb_010812_110--Hb_000844_030 Hb_026740_020 Hb_026740_020 Hb_010812_110--Hb_026740_020 Hb_000226_070 Hb_000226_070 Hb_010812_110--Hb_000226_070 Hb_014497_040 Hb_014497_040 Hb_010812_110--Hb_014497_040 Hb_010812_110--Hb_005941_030 Hb_014361_090 Hb_014361_090 Hb_030565_050--Hb_014361_090 Hb_004449_090 Hb_004449_090 Hb_030565_050--Hb_004449_090 Hb_005539_140 Hb_005539_140 Hb_030565_050--Hb_005539_140 Hb_000176_080 Hb_000176_080 Hb_030565_050--Hb_000176_080 Hb_030565_050--Hb_000603_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.0601 26.5049 35.2879 153.994 12.7629 13.923
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.27359 6.78951 2.399 27.9975 50.4538

CAGE analysis