Hb_014361_090

Information

Type -
Description -
Location Contig14361: 75074-76719
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa007836mg
description hypothetical protein
nr
ID AFZ62127.1
description acyl-CoA binding protein 3A [Vernicia fordii]
swissprot
ID Q9STX1
description Acyl-CoA-binding domain-containing protein 3 OS=Arabidopsis thaliana GN=ACBP3 PE=1 SV=1
trembl
ID K9ZS42
description Acyl-CoA binding protein 3A OS=Vernicia fordii GN=ACBP3A PE=2 SV=1
Gene Ontology
ID GO:0000062
description acyl- -binding domain-containing protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11458: 74532-76710
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014361_090 0.0 - - acyl-CoA binding protein 3A [Vernicia fordii]
2 Hb_030565_050 0.115317864 - - UDP-D-GLUCURONATE 4-EPIMERASE 6 family protein [Populus trichocarpa]
3 Hb_011828_010 0.1224290374 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
4 Hb_002559_030 0.1240366733 - - oxidoreductase, putative [Ricinus communis]
5 Hb_005941_030 0.1250438062 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
6 Hb_000071_160 0.1251707677 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
7 Hb_004899_340 0.1336418893 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
8 Hb_001195_310 0.1349288167 - - ATP binding protein, putative [Ricinus communis]
9 Hb_072398_010 0.135287205 - - pepsin A, putative [Ricinus communis]
10 Hb_020586_010 0.1366265236 - - Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis]
11 Hb_011021_010 0.1386958819 - - kinase, putative [Ricinus communis]
12 Hb_001969_140 0.1388209416 - - PREDICTED: uncharacterized protein LOC105634929 [Jatropha curcas]
13 Hb_001140_170 0.1397701352 - - PREDICTED: remorin [Jatropha curcas]
14 Hb_105033_010 0.141856107 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X2 [Jatropha curcas]
15 Hb_001195_090 0.1479790597 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
16 Hb_000603_020 0.1494839737 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
17 Hb_003006_090 0.1509063472 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
18 Hb_000012_400 0.1526039314 - - PREDICTED: K(+) efflux antiporter 6 [Jatropha curcas]
19 Hb_014497_040 0.1547396381 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
20 Hb_004449_090 0.1571244629 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]

Gene co-expression network

sample Hb_014361_090 Hb_014361_090 Hb_030565_050 Hb_030565_050 Hb_014361_090--Hb_030565_050 Hb_011828_010 Hb_011828_010 Hb_014361_090--Hb_011828_010 Hb_002559_030 Hb_002559_030 Hb_014361_090--Hb_002559_030 Hb_005941_030 Hb_005941_030 Hb_014361_090--Hb_005941_030 Hb_000071_160 Hb_000071_160 Hb_014361_090--Hb_000071_160 Hb_004899_340 Hb_004899_340 Hb_014361_090--Hb_004899_340 Hb_004449_090 Hb_004449_090 Hb_030565_050--Hb_004449_090 Hb_000684_220 Hb_000684_220 Hb_030565_050--Hb_000684_220 Hb_005539_140 Hb_005539_140 Hb_030565_050--Hb_005539_140 Hb_000176_080 Hb_000176_080 Hb_030565_050--Hb_000176_080 Hb_000603_020 Hb_000603_020 Hb_030565_050--Hb_000603_020 Hb_000473_120 Hb_000473_120 Hb_011828_010--Hb_000473_120 Hb_000138_060 Hb_000138_060 Hb_011828_010--Hb_000138_060 Hb_002289_150 Hb_002289_150 Hb_011828_010--Hb_002289_150 Hb_001969_140 Hb_001969_140 Hb_011828_010--Hb_001969_140 Hb_116702_010 Hb_116702_010 Hb_011828_010--Hb_116702_010 Hb_000271_220 Hb_000271_220 Hb_011828_010--Hb_000271_220 Hb_003006_090 Hb_003006_090 Hb_002559_030--Hb_003006_090 Hb_002559_030--Hb_011828_010 Hb_000056_110 Hb_000056_110 Hb_002559_030--Hb_000056_110 Hb_002559_030--Hb_000071_160 Hb_002685_220 Hb_002685_220 Hb_002559_030--Hb_002685_220 Hb_005941_030--Hb_000071_160 Hb_014497_040 Hb_014497_040 Hb_005941_030--Hb_014497_040 Hb_005941_030--Hb_011828_010 Hb_003029_060 Hb_003029_060 Hb_005941_030--Hb_003029_060 Hb_009838_020 Hb_009838_020 Hb_005941_030--Hb_009838_020 Hb_000071_160--Hb_011828_010 Hb_000071_160--Hb_000271_220 Hb_000071_160--Hb_004899_340 Hb_003929_190 Hb_003929_190 Hb_000071_160--Hb_003929_190 Hb_011021_010 Hb_011021_010 Hb_004899_340--Hb_011021_010 Hb_004899_340--Hb_001969_140 Hb_001623_080 Hb_001623_080 Hb_004899_340--Hb_001623_080 Hb_000959_300 Hb_000959_300 Hb_004899_340--Hb_000959_300 Hb_004899_340--Hb_009838_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.39345 7.86036 6.71071 27.3242 4.24561 3.55355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.15129 0.624575 0.290737 5.06482 18.3732

CAGE analysis