Hb_004449_090

Information

Type -
Description -
Location Contig4449: 60170-70801
Sequence    

Annotation

kegg
ID vvi:100243842
description CO(2)-response secreted protease
nr
ID XP_012068759.1
description PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
swissprot
ID Q9LNU1
description CO(2)-response secreted protease OS=Arabidopsis thaliana GN=CRSP PE=2 SV=1
trembl
ID A0A067KWL2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24600 PE=4 SV=1
Gene Ontology
ID GO:0004252
description subtilisin-like protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42821: 60048-63792 , PASA_asmbl_42823: 65677-67856 , PASA_asmbl_42824: 68126-70679
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004449_090 0.0 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
2 Hb_160405_010 0.1107960908 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
3 Hb_030565_050 0.1159595713 - - UDP-D-GLUCURONATE 4-EPIMERASE 6 family protein [Populus trichocarpa]
4 Hb_000028_580 0.1345101121 - - PREDICTED: glutamate decarboxylase 5-like [Jatropha curcas]
5 Hb_000300_230 0.1348098129 - - PREDICTED: cation/calcium exchanger 2 [Jatropha curcas]
6 Hb_002289_150 0.1414226339 - - PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Jatropha curcas]
7 Hb_011828_010 0.1544718979 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
8 Hb_000109_190 0.1559589998 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
9 Hb_000603_020 0.1562904578 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
10 Hb_014361_090 0.1571244629 - - acyl-CoA binding protein 3A [Vernicia fordii]
11 Hb_005941_030 0.1584591295 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
12 Hb_005016_020 0.1597335603 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
13 Hb_002097_080 0.161021677 - - phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis]
14 Hb_005539_140 0.1641850275 - - PREDICTED: U-box domain-containing protein 19-like [Jatropha curcas]
15 Hb_014497_040 0.164232746 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
16 Hb_001754_060 0.1651028558 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
17 Hb_002686_130 0.1672405793 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105650401 [Jatropha curcas]
18 Hb_010812_110 0.1689196818 - - putative plant disease resistance family protein [Populus trichocarpa]
19 Hb_000797_060 0.1690777909 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
20 Hb_098795_030 0.1698587143 - - PREDICTED: metal tolerance protein 1-like [Vitis vinifera]

Gene co-expression network

sample Hb_004449_090 Hb_004449_090 Hb_160405_010 Hb_160405_010 Hb_004449_090--Hb_160405_010 Hb_030565_050 Hb_030565_050 Hb_004449_090--Hb_030565_050 Hb_000028_580 Hb_000028_580 Hb_004449_090--Hb_000028_580 Hb_000300_230 Hb_000300_230 Hb_004449_090--Hb_000300_230 Hb_002289_150 Hb_002289_150 Hb_004449_090--Hb_002289_150 Hb_011828_010 Hb_011828_010 Hb_004449_090--Hb_011828_010 Hb_000032_430 Hb_000032_430 Hb_160405_010--Hb_000032_430 Hb_005016_020 Hb_005016_020 Hb_160405_010--Hb_005016_020 Hb_000000_110 Hb_000000_110 Hb_160405_010--Hb_000000_110 Hb_001357_030 Hb_001357_030 Hb_160405_010--Hb_001357_030 Hb_001178_080 Hb_001178_080 Hb_160405_010--Hb_001178_080 Hb_014361_090 Hb_014361_090 Hb_030565_050--Hb_014361_090 Hb_000684_220 Hb_000684_220 Hb_030565_050--Hb_000684_220 Hb_005539_140 Hb_005539_140 Hb_030565_050--Hb_005539_140 Hb_000176_080 Hb_000176_080 Hb_030565_050--Hb_000176_080 Hb_000603_020 Hb_000603_020 Hb_030565_050--Hb_000603_020 Hb_000028_550 Hb_000028_550 Hb_000028_580--Hb_000028_550 Hb_002097_080 Hb_002097_080 Hb_000028_580--Hb_002097_080 Hb_000479_060 Hb_000479_060 Hb_000028_580--Hb_000479_060 Hb_154038_040 Hb_154038_040 Hb_000028_580--Hb_154038_040 Hb_135720_010 Hb_135720_010 Hb_000028_580--Hb_135720_010 Hb_000797_060 Hb_000797_060 Hb_000300_230--Hb_000797_060 Hb_000300_230--Hb_002289_150 Hb_001754_060 Hb_001754_060 Hb_000300_230--Hb_001754_060 Hb_000138_060 Hb_000138_060 Hb_000300_230--Hb_000138_060 Hb_005489_150 Hb_005489_150 Hb_000300_230--Hb_005489_150 Hb_002289_150--Hb_000138_060 Hb_002289_150--Hb_001754_060 Hb_002289_150--Hb_000797_060 Hb_002289_150--Hb_011828_010 Hb_026740_020 Hb_026740_020 Hb_002289_150--Hb_026740_020 Hb_000473_120 Hb_000473_120 Hb_011828_010--Hb_000473_120 Hb_011828_010--Hb_000138_060 Hb_001969_140 Hb_001969_140 Hb_011828_010--Hb_001969_140 Hb_116702_010 Hb_116702_010 Hb_011828_010--Hb_116702_010 Hb_000271_220 Hb_000271_220 Hb_011828_010--Hb_000271_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.82485 10.5283 4.68822 29.3719 2.01838 3.18294
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.69702 0.292084 0.987039 4.93734 9.01103

CAGE analysis