Hb_005539_140

Information

Type -
Description -
Location Contig5539: 83719-85782
Sequence    

Annotation

kegg
ID cic:CICLE_v10030876mg
description hypothetical protein
nr
ID XP_012085351.1
description PREDICTED: U-box domain-containing protein 19-like [Jatropha curcas]
swissprot
ID O80742
description U-box domain-containing protein 19 OS=Arabidopsis thaliana GN=PUB19 PE=2 SV=1
trembl
ID A0A067JRP7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17725 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 19-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005539_140 0.0 - - PREDICTED: U-box domain-containing protein 19-like [Jatropha curcas]
2 Hb_005489_150 0.1161032688 - - hypothetical protein JCGZ_20759 [Jatropha curcas]
3 Hb_000479_060 0.1328762951 - - PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]
4 Hb_030565_050 0.1357807315 - - UDP-D-GLUCURONATE 4-EPIMERASE 6 family protein [Populus trichocarpa]
5 Hb_000455_070 0.1358900126 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
6 Hb_000030_130 0.1373560309 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
7 Hb_000109_190 0.145086666 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
8 Hb_003086_030 0.146118678 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
9 Hb_000805_140 0.1473892667 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
10 Hb_004007_070 0.1474501057 - - adenylsulfate kinase, putative [Ricinus communis]
11 Hb_002686_130 0.1513325177 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105650401 [Jatropha curcas]
12 Hb_000367_080 0.1513597695 - - PREDICTED: UDP-glucose 6-dehydrogenase 1-like [Jatropha curcas]
13 Hb_003470_110 0.1521011059 - - unnamed protein product [Vitis vinifera]
14 Hb_000236_180 0.1530179937 - - serine hydroxymethyltransferase, putative [Ricinus communis]
15 Hb_003001_130 0.1537258984 - - conserved hypothetical protein [Ricinus communis]
16 Hb_010968_030 0.1540272629 - - PREDICTED: uncharacterized protein LOC105643149 [Jatropha curcas]
17 Hb_000300_230 0.1547046299 - - PREDICTED: cation/calcium exchanger 2 [Jatropha curcas]
18 Hb_000928_200 0.1591628897 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
19 Hb_012395_110 0.1599232118 - - PREDICTED: peroxygenase [Jatropha curcas]
20 Hb_000365_280 0.1612138385 - - calcium binding protein/cast, putative [Ricinus communis]

Gene co-expression network

sample Hb_005539_140 Hb_005539_140 Hb_005489_150 Hb_005489_150 Hb_005539_140--Hb_005489_150 Hb_000479_060 Hb_000479_060 Hb_005539_140--Hb_000479_060 Hb_030565_050 Hb_030565_050 Hb_005539_140--Hb_030565_050 Hb_000455_070 Hb_000455_070 Hb_005539_140--Hb_000455_070 Hb_000030_130 Hb_000030_130 Hb_005539_140--Hb_000030_130 Hb_000109_190 Hb_000109_190 Hb_005539_140--Hb_000109_190 Hb_011360_110 Hb_011360_110 Hb_005489_150--Hb_011360_110 Hb_002289_150 Hb_002289_150 Hb_005489_150--Hb_002289_150 Hb_028639_030 Hb_028639_030 Hb_005489_150--Hb_028639_030 Hb_000320_350 Hb_000320_350 Hb_005489_150--Hb_000320_350 Hb_000300_230 Hb_000300_230 Hb_005489_150--Hb_000300_230 Hb_000365_280 Hb_000365_280 Hb_000479_060--Hb_000365_280 Hb_000479_060--Hb_000109_190 Hb_001999_200 Hb_001999_200 Hb_000479_060--Hb_001999_200 Hb_002973_030 Hb_002973_030 Hb_000479_060--Hb_002973_030 Hb_081864_010 Hb_081864_010 Hb_000479_060--Hb_081864_010 Hb_014361_090 Hb_014361_090 Hb_030565_050--Hb_014361_090 Hb_004449_090 Hb_004449_090 Hb_030565_050--Hb_004449_090 Hb_000684_220 Hb_000684_220 Hb_030565_050--Hb_000684_220 Hb_000176_080 Hb_000176_080 Hb_030565_050--Hb_000176_080 Hb_000603_020 Hb_000603_020 Hb_030565_050--Hb_000603_020 Hb_003470_110 Hb_003470_110 Hb_000455_070--Hb_003470_110 Hb_030565_100 Hb_030565_100 Hb_000455_070--Hb_030565_100 Hb_002110_290 Hb_002110_290 Hb_000455_070--Hb_002110_290 Hb_000236_180 Hb_000236_180 Hb_000455_070--Hb_000236_180 Hb_001195_090 Hb_001195_090 Hb_000455_070--Hb_001195_090 Hb_019516_060 Hb_019516_060 Hb_000030_130--Hb_019516_060 Hb_174541_030 Hb_174541_030 Hb_000030_130--Hb_174541_030 Hb_003086_030 Hb_003086_030 Hb_000030_130--Hb_003086_030 Hb_000246_130 Hb_000246_130 Hb_000030_130--Hb_000246_130 Hb_000928_200 Hb_000928_200 Hb_000030_130--Hb_000928_200 Hb_000030_130--Hb_030565_100 Hb_005408_100 Hb_005408_100 Hb_000109_190--Hb_005408_100 Hb_003001_130 Hb_003001_130 Hb_000109_190--Hb_003001_130 Hb_020805_120 Hb_020805_120 Hb_000109_190--Hb_020805_120 Hb_003929_230 Hb_003929_230 Hb_000109_190--Hb_003929_230 Hb_000109_190--Hb_000365_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0644527 0.858478 0.434622 3.16752 0.171231 0.0863258
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0871787 0.137191 0.227828 0.266003 1.30589

CAGE analysis