Hb_002110_290

Information

Type -
Description -
Location Contig2110: 245215-246399
Sequence    

Annotation

kegg
ID rcu:RCOM_1037570
description ring finger protein, putative
nr
ID XP_002513984.1
description ring finger protein, putative [Ricinus communis]
swissprot
ID Q8LFY8
description RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2 SV=2
trembl
ID B9RJR5
description Ring finger protein, putative OS=Ricinus communis GN=RCOM_1037570 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl54-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002110_290 0.0 - - ring finger protein, putative [Ricinus communis]
2 Hb_000455_070 0.1453334428 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
3 Hb_001186_110 0.1670331305 - - hypothetical protein JCGZ_18389 [Jatropha curcas]
4 Hb_000300_420 0.1725559047 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
5 Hb_002909_110 0.1739223754 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
6 Hb_003185_070 0.174131443 - - Plant natriuretic peptide A [Theobroma cacao]
7 Hb_000054_010 0.1795539342 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
8 Hb_000236_230 0.181081768 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
9 Hb_174541_030 0.1915072322 - - Cytochrome P450, family 98, subfamily A, polypeptide 3 [Theobroma cacao]
10 Hb_000950_030 0.1923427182 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g10290 [Nelumbo nucifera]
11 Hb_150486_010 0.1953676548 - - hypothetical protein CICLE_v100116733mg, partial [Citrus clementina]
12 Hb_000236_190 0.1965465323 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
13 Hb_000176_080 0.1980828223 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g30520 [Jatropha curcas]
14 Hb_011224_150 0.1995600449 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
15 Hb_096499_010 0.2020537301 - - hypothetical protein JCGZ_14833 [Jatropha curcas]
16 Hb_005183_130 0.2032150857 - - glycogenin, putative [Ricinus communis]
17 Hb_005539_140 0.2076206805 - - PREDICTED: U-box domain-containing protein 19-like [Jatropha curcas]
18 Hb_000236_180 0.2080243261 - - serine hydroxymethyltransferase, putative [Ricinus communis]
19 Hb_030565_100 0.2093342016 - - serine hydroxymethyltransferase, putative [Ricinus communis]
20 Hb_008695_220 0.2112123244 - - PREDICTED: uncharacterized protein LOC105638863 [Jatropha curcas]

Gene co-expression network

sample Hb_002110_290 Hb_002110_290 Hb_000455_070 Hb_000455_070 Hb_002110_290--Hb_000455_070 Hb_001186_110 Hb_001186_110 Hb_002110_290--Hb_001186_110 Hb_000300_420 Hb_000300_420 Hb_002110_290--Hb_000300_420 Hb_002909_110 Hb_002909_110 Hb_002110_290--Hb_002909_110 Hb_003185_070 Hb_003185_070 Hb_002110_290--Hb_003185_070 Hb_000054_010 Hb_000054_010 Hb_002110_290--Hb_000054_010 Hb_003470_110 Hb_003470_110 Hb_000455_070--Hb_003470_110 Hb_005539_140 Hb_005539_140 Hb_000455_070--Hb_005539_140 Hb_030565_100 Hb_030565_100 Hb_000455_070--Hb_030565_100 Hb_000236_180 Hb_000236_180 Hb_000455_070--Hb_000236_180 Hb_001195_090 Hb_001195_090 Hb_000455_070--Hb_001195_090 Hb_001186_110--Hb_000054_010 Hb_003001_050 Hb_003001_050 Hb_001186_110--Hb_003001_050 Hb_001186_110--Hb_000455_070 Hb_002203_020 Hb_002203_020 Hb_001186_110--Hb_002203_020 Hb_001186_110--Hb_000300_420 Hb_174541_030 Hb_174541_030 Hb_001186_110--Hb_174541_030 Hb_000236_190 Hb_000236_190 Hb_000300_420--Hb_000236_190 Hb_000806_130 Hb_000806_130 Hb_000300_420--Hb_000806_130 Hb_000077_100 Hb_000077_100 Hb_000300_420--Hb_000077_100 Hb_001329_180 Hb_001329_180 Hb_000300_420--Hb_001329_180 Hb_000300_420--Hb_000236_180 Hb_000580_110 Hb_000580_110 Hb_000300_420--Hb_000580_110 Hb_000442_120 Hb_000442_120 Hb_002909_110--Hb_000442_120 Hb_012707_010 Hb_012707_010 Hb_002909_110--Hb_012707_010 Hb_002909_110--Hb_000300_420 Hb_000950_030 Hb_000950_030 Hb_002909_110--Hb_000950_030 Hb_003397_020 Hb_003397_020 Hb_002909_110--Hb_003397_020 Hb_003185_070--Hb_001186_110 Hb_003185_070--Hb_000054_010 Hb_003185_070--Hb_000300_420 Hb_003185_070--Hb_000455_070 Hb_003185_070--Hb_000236_190 Hb_000054_010--Hb_030565_100 Hb_010883_180 Hb_010883_180 Hb_000054_010--Hb_010883_180 Hb_007311_050 Hb_007311_050 Hb_000054_010--Hb_007311_050 Hb_000054_010--Hb_174541_030 Hb_007574_040 Hb_007574_040 Hb_000054_010--Hb_007574_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.364822 1.63501 0.372534 21.3215 1.16226 0.83609
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.823729 0.356374 0.782979 2.58326 6.4321

CAGE analysis