Hb_000236_190

Information

Type -
Description -
Location Contig236: 185748-188045
Sequence    

Annotation

kegg
ID rcu:RCOM_0523500
description adenosylhomocysteinase, putative (EC:3.3.1.1)
nr
ID XP_012071085.1
description PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
swissprot
ID O23255
description Adenosylhomocysteinase 1 OS=Arabidopsis thaliana GN=SAHH1 PE=1 SV=1
trembl
ID A0A067KT70
description Adenosylhomocysteinase OS=Jatropha curcas GN=JCGZ_01084 PE=3 SV=1
Gene Ontology
ID GO:0004013
description s-adenosyl-l-homocysteine hydrolase a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24681: 185831-188732 , PASA_asmbl_24682: 186822-186930
cDNA
(Sanger)
(ID:Location)		 003_P21.ab1: 185830-186614 , 018_E21.ab1: 185831-186516 , 025_O06.ab1: 185831-186634 , 042_K22.ab1: 185830-186590 , 047_A23.ab1: 185831-186634 , 052_C11.ab1: 185831-186596

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_190 0.0 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
2 Hb_000300_420 0.1048716538 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
3 Hb_000806_130 0.1086939576 - - Adenosine kinase 2 [Theobroma cacao]
4 Hb_001119_070 0.1271724276 - - methylenetetrahydrofolate reductase, putative [Ricinus communis]
5 Hb_001486_350 0.129631333 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
6 Hb_001329_180 0.1310697241 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
7 Hb_009674_010 0.1365162415 - - AAEL007687-PA [Aedes aegypti]
8 Hb_001195_090 0.1384154909 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
9 Hb_098795_030 0.1478870141 - - PREDICTED: metal tolerance protein 1-like [Vitis vinifera]
10 Hb_000236_180 0.1487612443 - - serine hydroxymethyltransferase, putative [Ricinus communis]
11 Hb_002151_060 0.1500154836 - - PREDICTED: DNA-directed RNA polymerase III subunit rpc4 [Jatropha curcas]
12 Hb_000679_040 0.1528301731 - - Cellulose synthase 1 [Theobroma cacao]
13 Hb_000696_070 0.1543159651 - - PREDICTED: aspartic proteinase-like protein 1 [Jatropha curcas]
14 Hb_000455_070 0.1546276968 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
15 Hb_000077_100 0.1579217575 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X1 [Jatropha curcas]
16 Hb_012707_010 0.1596771838 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
17 Hb_000950_030 0.159863938 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g10290 [Nelumbo nucifera]
18 Hb_000580_110 0.160656574 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
19 Hb_002129_020 0.1632819885 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
20 Hb_000003_310 0.1662631894 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000236_190 Hb_000236_190 Hb_000300_420 Hb_000300_420 Hb_000236_190--Hb_000300_420 Hb_000806_130 Hb_000806_130 Hb_000236_190--Hb_000806_130 Hb_001119_070 Hb_001119_070 Hb_000236_190--Hb_001119_070 Hb_001486_350 Hb_001486_350 Hb_000236_190--Hb_001486_350 Hb_001329_180 Hb_001329_180 Hb_000236_190--Hb_001329_180 Hb_009674_010 Hb_009674_010 Hb_000236_190--Hb_009674_010 Hb_000300_420--Hb_000806_130 Hb_000077_100 Hb_000077_100 Hb_000300_420--Hb_000077_100 Hb_000300_420--Hb_001329_180 Hb_000236_180 Hb_000236_180 Hb_000300_420--Hb_000236_180 Hb_000580_110 Hb_000580_110 Hb_000300_420--Hb_000580_110 Hb_000806_130--Hb_001486_350 Hb_000806_130--Hb_001329_180 Hb_000696_070 Hb_000696_070 Hb_000806_130--Hb_000696_070 Hb_000806_130--Hb_001119_070 Hb_006351_020 Hb_006351_020 Hb_001119_070--Hb_006351_020 Hb_006615_230 Hb_006615_230 Hb_001119_070--Hb_006615_230 Hb_158092_040 Hb_158092_040 Hb_001119_070--Hb_158092_040 Hb_001119_070--Hb_000696_070 Hb_189003_070 Hb_189003_070 Hb_001119_070--Hb_189003_070 Hb_001486_350--Hb_000696_070 Hb_012707_010 Hb_012707_010 Hb_001486_350--Hb_012707_010 Hb_002781_050 Hb_002781_050 Hb_001486_350--Hb_002781_050 Hb_001486_350--Hb_000300_420 Hb_026527_010 Hb_026527_010 Hb_001329_180--Hb_026527_010 Hb_001922_030 Hb_001922_030 Hb_001329_180--Hb_001922_030 Hb_030565_100 Hb_030565_100 Hb_001329_180--Hb_030565_100 Hb_001216_110 Hb_001216_110 Hb_009674_010--Hb_001216_110 Hb_000684_310 Hb_000684_310 Hb_009674_010--Hb_000684_310 Hb_002129_020 Hb_002129_020 Hb_009674_010--Hb_002129_020 Hb_000679_040 Hb_000679_040 Hb_009674_010--Hb_000679_040 Hb_001195_090 Hb_001195_090 Hb_009674_010--Hb_001195_090 Hb_028639_030 Hb_028639_030 Hb_009674_010--Hb_028639_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
61.9529 68.1875 91.6171 740.511 35.2978 61.451
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.3154 26.0759 39.7298 257.617 285.817

CAGE analysis