Hb_000300_420

Information

Type -
Description -
Location Contig300: 370636-374671
Sequence    

Annotation

kegg
ID rcu:RCOM_1321820
description 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative (EC:2.1.1.14)
nr
ID XP_002525709.1
description 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
swissprot
ID Q42699
description 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1
trembl
ID B9SI90
description 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative OS=Ricinus communis GN=RCOM_1321820 PE=3 SV=1
Gene Ontology
ID GO:0003871
description 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31589: 369119-374687
cDNA
(Sanger)
(ID:Location)		 030_D01.ab1: 371770-373021

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_420 0.0 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
2 Hb_000236_190 0.1048716538 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
3 Hb_000806_130 0.1182937355 - - Adenosine kinase 2 [Theobroma cacao]
4 Hb_000077_100 0.1273879367 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X1 [Jatropha curcas]
5 Hb_001329_180 0.1318580204 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
6 Hb_000236_180 0.1396885618 - - serine hydroxymethyltransferase, putative [Ricinus communis]
7 Hb_000580_110 0.145111543 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
8 Hb_001486_350 0.146161198 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
9 Hb_030565_100 0.1465428119 - - serine hydroxymethyltransferase, putative [Ricinus communis]
10 Hb_029223_040 0.1474262174 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
11 Hb_001269_580 0.1484925321 - - PREDICTED: shikimate O-hydroxycinnamoyltransferase [Jatropha curcas]
12 Hb_098795_030 0.1508617472 - - PREDICTED: metal tolerance protein 1-like [Vitis vinifera]
13 Hb_001404_070 0.1576619889 - - sucrose synthase 4 [Hevea brasiliensis]
14 Hb_002750_040 0.1598684231 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
15 Hb_001186_110 0.1606446579 - - hypothetical protein JCGZ_18389 [Jatropha curcas]
16 Hb_006615_230 0.1616585584 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
17 Hb_000463_120 0.1619470977 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
18 Hb_003470_110 0.1633229988 - - unnamed protein product [Vitis vinifera]
19 Hb_001119_070 0.1634857972 - - methylenetetrahydrofolate reductase, putative [Ricinus communis]
20 Hb_000950_030 0.165676738 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g10290 [Nelumbo nucifera]

Gene co-expression network

sample Hb_000300_420 Hb_000300_420 Hb_000236_190 Hb_000236_190 Hb_000300_420--Hb_000236_190 Hb_000806_130 Hb_000806_130 Hb_000300_420--Hb_000806_130 Hb_000077_100 Hb_000077_100 Hb_000300_420--Hb_000077_100 Hb_001329_180 Hb_001329_180 Hb_000300_420--Hb_001329_180 Hb_000236_180 Hb_000236_180 Hb_000300_420--Hb_000236_180 Hb_000580_110 Hb_000580_110 Hb_000300_420--Hb_000580_110 Hb_000236_190--Hb_000806_130 Hb_001119_070 Hb_001119_070 Hb_000236_190--Hb_001119_070 Hb_001486_350 Hb_001486_350 Hb_000236_190--Hb_001486_350 Hb_000236_190--Hb_001329_180 Hb_009674_010 Hb_009674_010 Hb_000236_190--Hb_009674_010 Hb_000806_130--Hb_001486_350 Hb_000806_130--Hb_001329_180 Hb_000696_070 Hb_000696_070 Hb_000806_130--Hb_000696_070 Hb_000806_130--Hb_001119_070 Hb_030565_100 Hb_030565_100 Hb_000077_100--Hb_030565_100 Hb_000077_100--Hb_000236_180 Hb_029223_040 Hb_029223_040 Hb_000077_100--Hb_029223_040 Hb_000820_110 Hb_000820_110 Hb_000077_100--Hb_000820_110 Hb_000193_210 Hb_000193_210 Hb_000077_100--Hb_000193_210 Hb_000077_100--Hb_000580_110 Hb_026527_010 Hb_026527_010 Hb_001329_180--Hb_026527_010 Hb_001922_030 Hb_001922_030 Hb_001329_180--Hb_001922_030 Hb_001329_180--Hb_030565_100 Hb_000236_180--Hb_000580_110 Hb_003470_110 Hb_003470_110 Hb_000236_180--Hb_003470_110 Hb_000236_180--Hb_030565_100 Hb_000417_380 Hb_000417_380 Hb_000236_180--Hb_000417_380 Hb_006615_230 Hb_006615_230 Hb_000236_180--Hb_006615_230 Hb_000580_110--Hb_000417_380 Hb_002495_030 Hb_002495_030 Hb_000580_110--Hb_002495_030 Hb_000077_310 Hb_000077_310 Hb_000580_110--Hb_000077_310 Hb_001195_380 Hb_001195_380 Hb_000580_110--Hb_001195_380 Hb_001493_060 Hb_001493_060 Hb_000580_110--Hb_001493_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.1449 38.2994 64.4354 645.288 25.5898 20.7968
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.5661 18.4544 16.4159 207.608 265.113

CAGE analysis