Hb_003185_070

Information

Type -
Description -
Location Contig3185: 30402-30915
Sequence    

Annotation

kegg
ID tcc:TCM_038363
description Plant natriuretic peptide A
nr
ID XP_007013803.1
description Plant natriuretic peptide A [Theobroma cacao]
swissprot
ID Q9ZP41
description EG45-like domain containing protein OS=Citrus jambhiri GN=CjBAp12 PE=1 SV=1
trembl
ID A0A061GQI5
description Plant natriuretic peptide A OS=Theobroma cacao GN=TCM_038363 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33598: 30583-30809
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003185_070 0.0 - - Plant natriuretic peptide A [Theobroma cacao]
2 Hb_002110_290 0.174131443 - - ring finger protein, putative [Ricinus communis]
3 Hb_001186_110 0.1872954341 - - hypothetical protein JCGZ_18389 [Jatropha curcas]
4 Hb_000054_010 0.2094221039 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
5 Hb_000300_420 0.2123376421 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
6 Hb_000455_070 0.2330567896 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
7 Hb_000236_190 0.2347188444 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
8 Hb_000300_520 0.2440838368 - - hypothetical protein JCGZ_02702 [Jatropha curcas]
9 Hb_000077_100 0.2463037994 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X1 [Jatropha curcas]
10 Hb_002909_110 0.2479527895 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
11 Hb_009486_030 0.2492188714 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 12 [Jatropha curcas]
12 Hb_000676_300 0.25202563 - - PREDICTED: probable caffeine synthase 4 [Jatropha curcas]
13 Hb_005529_020 0.2528399875 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32 [Jatropha curcas]
14 Hb_030565_100 0.2528462044 - - serine hydroxymethyltransferase, putative [Ricinus communis]
15 Hb_174541_030 0.2537622718 - - Cytochrome P450, family 98, subfamily A, polypeptide 3 [Theobroma cacao]
16 Hb_004117_020 0.2545613099 - - conserved hypothetical protein [Ricinus communis]
17 Hb_150486_010 0.2570553652 - - hypothetical protein CICLE_v100116733mg, partial [Citrus clementina]
18 Hb_000806_130 0.257837291 - - Adenosine kinase 2 [Theobroma cacao]
19 Hb_000363_260 0.2585096714 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
20 Hb_000950_030 0.2592466099 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g10290 [Nelumbo nucifera]

Gene co-expression network

sample Hb_003185_070 Hb_003185_070 Hb_002110_290 Hb_002110_290 Hb_003185_070--Hb_002110_290 Hb_001186_110 Hb_001186_110 Hb_003185_070--Hb_001186_110 Hb_000054_010 Hb_000054_010 Hb_003185_070--Hb_000054_010 Hb_000300_420 Hb_000300_420 Hb_003185_070--Hb_000300_420 Hb_000455_070 Hb_000455_070 Hb_003185_070--Hb_000455_070 Hb_000236_190 Hb_000236_190 Hb_003185_070--Hb_000236_190 Hb_002110_290--Hb_000455_070 Hb_002110_290--Hb_001186_110 Hb_002110_290--Hb_000300_420 Hb_002909_110 Hb_002909_110 Hb_002110_290--Hb_002909_110 Hb_002110_290--Hb_000054_010 Hb_001186_110--Hb_000054_010 Hb_003001_050 Hb_003001_050 Hb_001186_110--Hb_003001_050 Hb_001186_110--Hb_000455_070 Hb_002203_020 Hb_002203_020 Hb_001186_110--Hb_002203_020 Hb_001186_110--Hb_000300_420 Hb_174541_030 Hb_174541_030 Hb_001186_110--Hb_174541_030 Hb_030565_100 Hb_030565_100 Hb_000054_010--Hb_030565_100 Hb_010883_180 Hb_010883_180 Hb_000054_010--Hb_010883_180 Hb_007311_050 Hb_007311_050 Hb_000054_010--Hb_007311_050 Hb_000054_010--Hb_174541_030 Hb_007574_040 Hb_007574_040 Hb_000054_010--Hb_007574_040 Hb_000300_420--Hb_000236_190 Hb_000806_130 Hb_000806_130 Hb_000300_420--Hb_000806_130 Hb_000077_100 Hb_000077_100 Hb_000300_420--Hb_000077_100 Hb_001329_180 Hb_001329_180 Hb_000300_420--Hb_001329_180 Hb_000236_180 Hb_000236_180 Hb_000300_420--Hb_000236_180 Hb_000580_110 Hb_000580_110 Hb_000300_420--Hb_000580_110 Hb_003470_110 Hb_003470_110 Hb_000455_070--Hb_003470_110 Hb_005539_140 Hb_005539_140 Hb_000455_070--Hb_005539_140 Hb_000455_070--Hb_030565_100 Hb_000455_070--Hb_000236_180 Hb_001195_090 Hb_001195_090 Hb_000455_070--Hb_001195_090 Hb_000236_190--Hb_000806_130 Hb_001119_070 Hb_001119_070 Hb_000236_190--Hb_001119_070 Hb_001486_350 Hb_001486_350 Hb_000236_190--Hb_001486_350 Hb_000236_190--Hb_001329_180 Hb_009674_010 Hb_009674_010 Hb_000236_190--Hb_009674_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.23007 1.06188 0.903435 37.3372 3.54096 0.187886
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.354191 0.278199 1.5875 6.07217 7.23396

CAGE analysis