Hb_000479_060

Information

Type -
Description -
Location Contig479: 48662-50104
Sequence    

Annotation

kegg
ID vvi:100264653
description UDP-glucose 6-dehydrogenase-like
nr
ID XP_002284346.1
description PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]
swissprot
ID Q96558
description UDP-glucose 6-dehydrogenase 1 OS=Glycine max GN=UGD1 PE=2 SV=1
trembl
ID A5AVX9
description UDP-glucose 6-dehydrogenase OS=Vitis vinifera GN=VITISV_020300 PE=3 SV=1
Gene Ontology
ID GO:0003979
description udp-glucose 6-dehydrogenase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44606: 47634-50428
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000479_060 0.0 - - PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]
2 Hb_000365_280 0.094774706 - - calcium binding protein/cast, putative [Ricinus communis]
3 Hb_000109_190 0.1167228905 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
4 Hb_001999_200 0.1197483645 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
5 Hb_005539_140 0.1328762951 - - PREDICTED: U-box domain-containing protein 19-like [Jatropha curcas]
6 Hb_002973_030 0.1380891219 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
7 Hb_081864_010 0.1386837611 - - ankyrin repeat-containing protein, putative [Ricinus communis]
8 Hb_004007_070 0.1391497324 - - adenylsulfate kinase, putative [Ricinus communis]
9 Hb_003001_130 0.1392680726 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002066_010 0.1431756671 - - PREDICTED: acetylglutamate kinase, chloroplastic [Jatropha curcas]
11 Hb_001951_190 0.1442167107 - - PREDICTED: glucan endo-1,3-beta-glucosidase 3-like isoform X2 [Populus euphratica]
12 Hb_000638_180 0.1452404136 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
13 Hb_004241_110 0.1463900643 - - Minor allergen Alt a, putative [Ricinus communis]
14 Hb_012395_110 0.1513554571 - - PREDICTED: peroxygenase [Jatropha curcas]
15 Hb_003929_230 0.15150751 - - PREDICTED: S-adenosylmethionine synthase 5 [Nelumbo nucifera]
16 Hb_000028_580 0.1519653308 - - PREDICTED: glutamate decarboxylase 5-like [Jatropha curcas]
17 Hb_001221_290 0.1535007771 - - hypothetical protein RCOM_1506010 [Ricinus communis]
18 Hb_002762_100 0.1548559201 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000928_200 0.1553290197 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
20 Hb_003086_030 0.1558593658 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]

Gene co-expression network

sample Hb_000479_060 Hb_000479_060 Hb_000365_280 Hb_000365_280 Hb_000479_060--Hb_000365_280 Hb_000109_190 Hb_000109_190 Hb_000479_060--Hb_000109_190 Hb_001999_200 Hb_001999_200 Hb_000479_060--Hb_001999_200 Hb_005539_140 Hb_005539_140 Hb_000479_060--Hb_005539_140 Hb_002973_030 Hb_002973_030 Hb_000479_060--Hb_002973_030 Hb_081864_010 Hb_081864_010 Hb_000479_060--Hb_081864_010 Hb_004007_070 Hb_004007_070 Hb_000365_280--Hb_004007_070 Hb_002893_030 Hb_002893_030 Hb_000365_280--Hb_002893_030 Hb_005054_020 Hb_005054_020 Hb_000365_280--Hb_005054_020 Hb_000365_280--Hb_000109_190 Hb_002026_050 Hb_002026_050 Hb_000365_280--Hb_002026_050 Hb_005408_100 Hb_005408_100 Hb_000109_190--Hb_005408_100 Hb_003001_130 Hb_003001_130 Hb_000109_190--Hb_003001_130 Hb_020805_120 Hb_020805_120 Hb_000109_190--Hb_020805_120 Hb_003929_230 Hb_003929_230 Hb_000109_190--Hb_003929_230 Hb_002598_040 Hb_002598_040 Hb_001999_200--Hb_002598_040 Hb_002762_100 Hb_002762_100 Hb_001999_200--Hb_002762_100 Hb_000403_100 Hb_000403_100 Hb_001999_200--Hb_000403_100 Hb_017700_030 Hb_017700_030 Hb_001999_200--Hb_017700_030 Hb_001675_310 Hb_001675_310 Hb_001999_200--Hb_001675_310 Hb_005489_150 Hb_005489_150 Hb_005539_140--Hb_005489_150 Hb_030565_050 Hb_030565_050 Hb_005539_140--Hb_030565_050 Hb_000455_070 Hb_000455_070 Hb_005539_140--Hb_000455_070 Hb_000030_130 Hb_000030_130 Hb_005539_140--Hb_000030_130 Hb_005539_140--Hb_000109_190 Hb_002004_010 Hb_002004_010 Hb_002973_030--Hb_002004_010 Hb_002066_010 Hb_002066_010 Hb_002973_030--Hb_002066_010 Hb_000753_120 Hb_000753_120 Hb_002973_030--Hb_000753_120 Hb_000270_750 Hb_000270_750 Hb_002973_030--Hb_000270_750 Hb_013405_100 Hb_013405_100 Hb_002973_030--Hb_013405_100 Hb_001405_170 Hb_001405_170 Hb_081864_010--Hb_001405_170 Hb_010174_200 Hb_010174_200 Hb_081864_010--Hb_010174_200 Hb_002960_030 Hb_002960_030 Hb_081864_010--Hb_002960_030 Hb_002053_190 Hb_002053_190 Hb_081864_010--Hb_002053_190 Hb_081864_010--Hb_002762_100 Hb_000020_210 Hb_000020_210 Hb_081864_010--Hb_000020_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.85826 198.587 104.283 433.706 7.10867 8.35854
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.96061 13.4627 18.0739 35.164 157.385

CAGE analysis