Hb_002066_010

Information

Type -
Description -
Location Contig2066: 23540-24613
Sequence    

Annotation

kegg
ID rcu:RCOM_0813570
description Acetylglutamate kinase, putative (EC:2.7.2.8)
nr
ID XP_012066875.1
description PREDICTED: acetylglutamate kinase, chloroplastic [Jatropha curcas]
swissprot
ID Q9SCL7
description Acetylglutamate kinase, chloroplastic OS=Arabidopsis thaliana GN=NAGK PE=1 SV=1
trembl
ID A0A067L504
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01607 PE=3 SV=1
Gene Ontology
ID GO:0009534
description acetylglutamate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002066_010 0.0 - - PREDICTED: acetylglutamate kinase, chloroplastic [Jatropha curcas]
2 Hb_000258_230 0.1154237797 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000172_070 0.1175232625 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
4 Hb_152277_010 0.1239081362 - - PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like [Jatropha curcas]
5 Hb_007103_020 0.1245545144 - - hypothetical protein POPTR_0007s04191g [Populus trichocarpa]
6 Hb_002250_140 0.1245654329 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 isoform X1 [Populus euphratica]
7 Hb_000270_750 0.1279351855 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
8 Hb_007292_050 0.1286687368 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
9 Hb_002973_030 0.1308047727 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
10 Hb_002004_010 0.1346190794 - - CBL-interacting protein kinase 9 [Populus trichocarpa]
11 Hb_173107_020 0.1373797897 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
12 Hb_000256_220 0.1378265553 - - PREDICTED: flotillin-like protein 4 [Jatropha curcas]
13 Hb_009771_040 0.1386471275 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
14 Hb_114733_010 0.138918419 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
15 Hb_000479_060 0.1431756671 - - PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]
16 Hb_000984_110 0.1437381444 - - hypothetical protein JCGZ_15953 [Jatropha curcas]
17 Hb_000638_180 0.1456886235 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
18 Hb_026050_010 0.1463051343 - - protein phosphatase 2c, putative [Ricinus communis]
19 Hb_002168_070 0.1465145857 - - Jasmonate O-methyltransferase, putative [Ricinus communis]
20 Hb_004102_200 0.14872857 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002066_010 Hb_002066_010 Hb_000258_230 Hb_000258_230 Hb_002066_010--Hb_000258_230 Hb_000172_070 Hb_000172_070 Hb_002066_010--Hb_000172_070 Hb_152277_010 Hb_152277_010 Hb_002066_010--Hb_152277_010 Hb_007103_020 Hb_007103_020 Hb_002066_010--Hb_007103_020 Hb_002250_140 Hb_002250_140 Hb_002066_010--Hb_002250_140 Hb_000270_750 Hb_000270_750 Hb_002066_010--Hb_000270_750 Hb_009771_040 Hb_009771_040 Hb_000258_230--Hb_009771_040 Hb_000258_230--Hb_002250_140 Hb_000258_230--Hb_007103_020 Hb_000258_230--Hb_152277_010 Hb_026050_010 Hb_026050_010 Hb_000258_230--Hb_026050_010 Hb_000201_010 Hb_000201_010 Hb_000258_230--Hb_000201_010 Hb_005618_010 Hb_005618_010 Hb_000172_070--Hb_005618_010 Hb_010267_030 Hb_010267_030 Hb_000172_070--Hb_010267_030 Hb_005048_090 Hb_005048_090 Hb_000172_070--Hb_005048_090 Hb_007292_050 Hb_007292_050 Hb_000172_070--Hb_007292_050 Hb_000230_550 Hb_000230_550 Hb_000172_070--Hb_000230_550 Hb_002170_010 Hb_002170_010 Hb_000172_070--Hb_002170_010 Hb_000983_130 Hb_000983_130 Hb_152277_010--Hb_000983_130 Hb_004102_200 Hb_004102_200 Hb_152277_010--Hb_004102_200 Hb_005790_010 Hb_005790_010 Hb_152277_010--Hb_005790_010 Hb_152277_010--Hb_007103_020 Hb_152277_010--Hb_009771_040 Hb_027892_050 Hb_027892_050 Hb_007103_020--Hb_027892_050 Hb_007103_020--Hb_009771_040 Hb_007103_020--Hb_002250_140 Hb_007103_020--Hb_005790_010 Hb_002250_140--Hb_009771_040 Hb_002250_140--Hb_026050_010 Hb_173107_020 Hb_173107_020 Hb_002250_140--Hb_173107_020 Hb_002335_010 Hb_002335_010 Hb_002250_140--Hb_002335_010 Hb_000270_750--Hb_173107_020 Hb_000270_750--Hb_009771_040 Hb_114733_010 Hb_114733_010 Hb_000270_750--Hb_114733_010 Hb_000270_750--Hb_002250_140 Hb_002168_070 Hb_002168_070 Hb_000270_750--Hb_002168_070 Hb_001269_530 Hb_001269_530 Hb_000270_750--Hb_001269_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.76046 25.0009 6.43435 34.2062 0.49521 0.532303
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.185599 0.510939 0.337382 1.45059 18.4564

CAGE analysis