Hb_000270_750

Information

Type -
Description -
Location Contig270: 611427-612521
Sequence    

Annotation

kegg
ID pop:POPTR_0012s07960g
description POPTRDRAFT_422315; hypothetical protein
nr
ID XP_011044332.1
description PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
swissprot
ID Q9FL07
description RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2 SV=1
trembl
ID B9I378
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s07960g PE=4 SV=2
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl46-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28274: 611537-611971
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_750 0.0 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
2 Hb_173107_020 0.0981084746 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
3 Hb_009771_040 0.1047545797 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
4 Hb_114733_010 0.106968731 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
5 Hb_002250_140 0.1100561399 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 isoform X1 [Populus euphratica]
6 Hb_002168_070 0.1120097374 - - Jasmonate O-methyltransferase, putative [Ricinus communis]
7 Hb_001269_530 0.1161526734 - - ATP-binding cassette transporter, putative [Ricinus communis]
8 Hb_000384_020 0.1163923127 - - sucrose phosphate syntase, putative [Ricinus communis]
9 Hb_000258_230 0.118122303 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000045_080 0.1220385349 - - amino acid transporter, putative [Ricinus communis]
11 Hb_026050_010 0.124012998 - - protein phosphatase 2c, putative [Ricinus communis]
12 Hb_007292_050 0.1251209387 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
13 Hb_010174_200 0.1258533655 - - PREDICTED: uncharacterized protein LOC105644743 isoform X1 [Jatropha curcas]
14 Hb_007103_020 0.1260685434 - - hypothetical protein POPTR_0007s04191g [Populus trichocarpa]
15 Hb_008598_010 0.1271868532 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
16 Hb_002066_010 0.1279351855 - - PREDICTED: acetylglutamate kinase, chloroplastic [Jatropha curcas]
17 Hb_027892_050 0.1279468116 - - hypothetical protein PHAVU_009G226400g [Phaseolus vulgaris]
18 Hb_002335_010 0.1290565142 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
19 Hb_000363_250 0.1292095953 - - PREDICTED: pirin-like protein [Malus domestica]
20 Hb_000434_060 0.1293551624 desease resistance Gene Name: hmm Disease resistance protein RPM1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000270_750 Hb_000270_750 Hb_173107_020 Hb_173107_020 Hb_000270_750--Hb_173107_020 Hb_009771_040 Hb_009771_040 Hb_000270_750--Hb_009771_040 Hb_114733_010 Hb_114733_010 Hb_000270_750--Hb_114733_010 Hb_002250_140 Hb_002250_140 Hb_000270_750--Hb_002250_140 Hb_002168_070 Hb_002168_070 Hb_000270_750--Hb_002168_070 Hb_001269_530 Hb_001269_530 Hb_000270_750--Hb_001269_530 Hb_000384_020 Hb_000384_020 Hb_173107_020--Hb_000384_020 Hb_173107_020--Hb_114733_010 Hb_173107_020--Hb_002250_140 Hb_000991_080 Hb_000991_080 Hb_173107_020--Hb_000991_080 Hb_173107_020--Hb_009771_040 Hb_000045_080 Hb_000045_080 Hb_173107_020--Hb_000045_080 Hb_009771_040--Hb_002168_070 Hb_026050_010 Hb_026050_010 Hb_009771_040--Hb_026050_010 Hb_009771_040--Hb_002250_140 Hb_000258_230 Hb_000258_230 Hb_009771_040--Hb_000258_230 Hb_000434_060 Hb_000434_060 Hb_009771_040--Hb_000434_060 Hb_114733_010--Hb_000384_020 Hb_000816_150 Hb_000816_150 Hb_114733_010--Hb_000816_150 Hb_017700_030 Hb_017700_030 Hb_114733_010--Hb_017700_030 Hb_114733_010--Hb_000991_080 Hb_000732_100 Hb_000732_100 Hb_114733_010--Hb_000732_100 Hb_002250_140--Hb_026050_010 Hb_002250_140--Hb_000258_230 Hb_007103_020 Hb_007103_020 Hb_002250_140--Hb_007103_020 Hb_002335_010 Hb_002335_010 Hb_002250_140--Hb_002335_010 Hb_002043_070 Hb_002043_070 Hb_002168_070--Hb_002043_070 Hb_002168_070--Hb_000434_060 Hb_002053_190 Hb_002053_190 Hb_002168_070--Hb_002053_190 Hb_001405_170 Hb_001405_170 Hb_002168_070--Hb_001405_170 Hb_005211_210 Hb_005211_210 Hb_002168_070--Hb_005211_210 Hb_001913_030 Hb_001913_030 Hb_001269_530--Hb_001913_030 Hb_000537_090 Hb_000537_090 Hb_001269_530--Hb_000537_090 Hb_001269_530--Hb_002335_010 Hb_001269_530--Hb_000732_100 Hb_000589_330 Hb_000589_330 Hb_001269_530--Hb_000589_330 Hb_001269_530--Hb_173107_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0198143 5.0322 1.90886 6.82729 0.11271 0.106455
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.135944 0 0 0.91546 4.25509

CAGE analysis