Hb_000384_020

Information

Type -
Description -
Location Contig384: 18098-25687
Sequence    

Annotation

kegg
ID rcu:RCOM_1329250
description sucrose phosphate syntase, putative (EC:2.4.1.14)
nr
ID XP_002521744.1
description sucrose phosphate syntase, putative [Ricinus communis]
swissprot
ID F4JLK2
description Probable sucrose-phosphate synthase 4 OS=Arabidopsis thaliana GN=SPS4 PE=1 SV=1
trembl
ID B9S6X5
description Sucrose phosphate syntase, putative OS=Ricinus communis GN=RCOM_1329250 PE=4 SV=1
Gene Ontology
ID GO:0005886
description probable sucrose-phosphate synthase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38683: 18309-25421
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000384_020 0.0 - - sucrose phosphate syntase, putative [Ricinus communis]
2 Hb_173107_020 0.0669777469 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
3 Hb_000816_150 0.0669821266 - - oligopeptide transporter, putative [Ricinus communis]
4 Hb_114733_010 0.0692008864 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
5 Hb_000991_080 0.0783051707 - - kinase, putative [Ricinus communis]
6 Hb_000162_070 0.0860921044 - - phospholipase C, putative [Ricinus communis]
7 Hb_000045_080 0.0874593275 - - amino acid transporter, putative [Ricinus communis]
8 Hb_008598_010 0.1021908383 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
9 Hb_026144_040 0.1027472432 - - -
10 Hb_154038_040 0.1041180118 - - nutrient reservoir, putative [Ricinus communis]
11 Hb_001117_180 0.105337997 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
12 Hb_002598_020 0.1078248128 - - PREDICTED: sugar transporter ERD6-like 5 [Populus euphratica]
13 Hb_017862_030 0.1080595785 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
14 Hb_017700_030 0.1097145085 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
15 Hb_009771_040 0.1114808449 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
16 Hb_002598_040 0.112451359 - - hypothetical protein OsI_22030 [Oryza sativa Indica Group]
17 Hb_000732_100 0.1125018601 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
18 Hb_000468_050 0.1137036077 - - -
19 Hb_000270_750 0.1163923127 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
20 Hb_010174_200 0.1195235861 - - PREDICTED: uncharacterized protein LOC105644743 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000384_020 Hb_000384_020 Hb_173107_020 Hb_173107_020 Hb_000384_020--Hb_173107_020 Hb_000816_150 Hb_000816_150 Hb_000384_020--Hb_000816_150 Hb_114733_010 Hb_114733_010 Hb_000384_020--Hb_114733_010 Hb_000991_080 Hb_000991_080 Hb_000384_020--Hb_000991_080 Hb_000162_070 Hb_000162_070 Hb_000384_020--Hb_000162_070 Hb_000045_080 Hb_000045_080 Hb_000384_020--Hb_000045_080 Hb_173107_020--Hb_114733_010 Hb_002250_140 Hb_002250_140 Hb_173107_020--Hb_002250_140 Hb_173107_020--Hb_000991_080 Hb_009771_040 Hb_009771_040 Hb_173107_020--Hb_009771_040 Hb_173107_020--Hb_000045_080 Hb_000468_050 Hb_000468_050 Hb_000816_150--Hb_000468_050 Hb_000816_150--Hb_114733_010 Hb_017700_030 Hb_017700_030 Hb_000816_150--Hb_017700_030 Hb_009225_070 Hb_009225_070 Hb_000816_150--Hb_009225_070 Hb_000816_150--Hb_000991_080 Hb_114733_010--Hb_017700_030 Hb_114733_010--Hb_000991_080 Hb_000732_100 Hb_000732_100 Hb_114733_010--Hb_000732_100 Hb_001013_080 Hb_001013_080 Hb_000991_080--Hb_001013_080 Hb_003435_040 Hb_003435_040 Hb_000991_080--Hb_003435_040 Hb_000991_080--Hb_000162_070 Hb_026144_040 Hb_026144_040 Hb_000162_070--Hb_026144_040 Hb_008598_010 Hb_008598_010 Hb_000162_070--Hb_008598_010 Hb_007237_080 Hb_007237_080 Hb_000162_070--Hb_007237_080 Hb_000162_070--Hb_000045_080 Hb_002811_110 Hb_002811_110 Hb_000162_070--Hb_002811_110 Hb_000045_080--Hb_008598_010 Hb_017862_030 Hb_017862_030 Hb_000045_080--Hb_017862_030 Hb_000045_080--Hb_026144_040 Hb_002151_020 Hb_002151_020 Hb_000045_080--Hb_002151_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0608081 9.95691 4.85775 21.379 0.153513 0.0979523
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0264564 0.0208196 0 2.59989 7.54076

CAGE analysis