Hb_002170_010

Information

Type -
Description -
Location Contig2170: 44516-45931
Sequence    

Annotation

kegg
ID pop:POPTR_0006s09870g
description POPTRDRAFT_560885; transferase family protein
nr
ID KDP24482.1
description hypothetical protein JCGZ_25046 [Jatropha curcas]
swissprot
ID Q9FF86
description BAHD acyltransferase DCR OS=Arabidopsis thaliana GN=DCR PE=2 SV=1
trembl
ID A0A067JKR3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25046 PE=4 SV=1
Gene Ontology
ID GO:0047672
description bahd acyltransferase dcr

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22404: 42588-44574
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002170_010 0.0 - - hypothetical protein JCGZ_25046 [Jatropha curcas]
2 Hb_128216_010 0.0672098346 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
3 Hb_112145_010 0.0723326009 - - kinase, putative [Ricinus communis]
4 Hb_005048_090 0.0958893194 - - PREDICTED: glycine-rich cell wall structural protein 2 [Jatropha curcas]
5 Hb_010267_030 0.1005834417 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
6 Hb_006951_010 0.1067060038 - - PREDICTED: ubiquitin-conjugating enzyme E2 10-like [Populus euphratica]
7 Hb_002534_070 0.1075525838 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
8 Hb_000230_550 0.1082273509 - - PREDICTED: adenylate isopentenyltransferase 5, chloroplastic [Jatropha curcas]
9 Hb_005618_010 0.1116719045 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]
10 Hb_000172_070 0.1118030849 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
11 Hb_000227_350 0.1136373273 - - hypothetical protein CICLE_v10006537mg [Citrus clementina]
12 Hb_080601_010 0.1157623679 - - metallothionein 3-like protein [Hevea brasiliensis]
13 Hb_004450_090 0.120056193 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
14 Hb_003023_030 0.1236210924 - - PREDICTED: MATE efflux family protein 5-like isoform X1 [Citrus sinensis]
15 Hb_004102_200 0.1284493034 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
16 Hb_004474_070 0.1299141235 desease resistance Gene Name: NB-ARC Disease resistance protein RPP8, putative [Ricinus communis]
17 Hb_000201_070 0.130692412 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
18 Hb_002303_050 0.1331151009 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor PTL-like [Populus euphratica]
19 Hb_000984_110 0.1339658562 - - hypothetical protein JCGZ_15953 [Jatropha curcas]
20 Hb_002804_070 0.1342064785 - - hypothetical protein JCGZ_05701 [Jatropha curcas]

Gene co-expression network

sample Hb_002170_010 Hb_002170_010 Hb_128216_010 Hb_128216_010 Hb_002170_010--Hb_128216_010 Hb_112145_010 Hb_112145_010 Hb_002170_010--Hb_112145_010 Hb_005048_090 Hb_005048_090 Hb_002170_010--Hb_005048_090 Hb_010267_030 Hb_010267_030 Hb_002170_010--Hb_010267_030 Hb_006951_010 Hb_006951_010 Hb_002170_010--Hb_006951_010 Hb_002534_070 Hb_002534_070 Hb_002170_010--Hb_002534_070 Hb_004474_070 Hb_004474_070 Hb_128216_010--Hb_004474_070 Hb_128216_010--Hb_112145_010 Hb_002303_050 Hb_002303_050 Hb_128216_010--Hb_002303_050 Hb_001953_010 Hb_001953_010 Hb_128216_010--Hb_001953_010 Hb_002804_070 Hb_002804_070 Hb_128216_010--Hb_002804_070 Hb_112145_010--Hb_002303_050 Hb_155015_020 Hb_155015_020 Hb_112145_010--Hb_155015_020 Hb_112145_010--Hb_006951_010 Hb_002811_320 Hb_002811_320 Hb_112145_010--Hb_002811_320 Hb_000984_110 Hb_000984_110 Hb_005048_090--Hb_000984_110 Hb_000230_550 Hb_000230_550 Hb_005048_090--Hb_000230_550 Hb_005048_090--Hb_010267_030 Hb_001295_050 Hb_001295_050 Hb_005048_090--Hb_001295_050 Hb_000172_070 Hb_000172_070 Hb_005048_090--Hb_000172_070 Hb_000201_070 Hb_000201_070 Hb_010267_030--Hb_000201_070 Hb_010267_030--Hb_000172_070 Hb_005618_010 Hb_005618_010 Hb_010267_030--Hb_005618_010 Hb_010267_030--Hb_112145_010 Hb_002186_030 Hb_002186_030 Hb_006951_010--Hb_002186_030 Hb_006951_010--Hb_000201_070 Hb_004374_170 Hb_004374_170 Hb_006951_010--Hb_004374_170 Hb_006951_010--Hb_002804_070 Hb_003023_030 Hb_003023_030 Hb_002534_070--Hb_003023_030 Hb_002960_030 Hb_002960_030 Hb_002534_070--Hb_002960_030 Hb_004450_090 Hb_004450_090 Hb_002534_070--Hb_004450_090 Hb_103225_030 Hb_103225_030 Hb_002534_070--Hb_103225_030 Hb_000646_040 Hb_000646_040 Hb_002534_070--Hb_000646_040 Hb_080601_010 Hb_080601_010 Hb_002534_070--Hb_080601_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0328626 50.4668 16.0437 84.5095 0.0411476 0.042501
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0333811 0 0 0.125891 22.7429

CAGE analysis