Hb_001295_050

Information

Type -
Description -
Location Contig1295: 41971-46301
Sequence    

Annotation

kegg
ID cam:101503108
description uncharacterized LOC101503108
nr
ID XP_004486633.1
description PREDICTED: uncharacterized protein LOC101503108 isoform X1 [Cicer arietinum]
swissprot
ID -
description -
trembl
ID G7JFS3
description CTV.22, putative OS=Medicago truncatula GN=MTR_4g009710 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001295_050 0.0 - - PREDICTED: uncharacterized protein LOC101503108 isoform X1 [Cicer arietinum]
2 Hb_005048_090 0.0889409078 - - PREDICTED: glycine-rich cell wall structural protein 2 [Jatropha curcas]
3 Hb_020301_010 0.1081026586 - - cytochrome P450, putative [Ricinus communis]
4 Hb_003145_030 0.108124632 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000984_110 0.1123865064 - - hypothetical protein JCGZ_15953 [Jatropha curcas]
6 Hb_010267_030 0.1134983659 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
7 Hb_000172_070 0.1217522721 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
8 Hb_000230_550 0.1242852853 - - PREDICTED: adenylate isopentenyltransferase 5, chloroplastic [Jatropha curcas]
9 Hb_001907_050 0.1425727048 - - Receptor like protein 6, putative [Theobroma cacao]
10 Hb_000974_030 0.1442977293 - - PREDICTED: uncharacterized protein LOC105128463 isoform X1 [Populus euphratica]
11 Hb_004218_290 0.1465796559 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 6 isoform X2 [Jatropha curcas]
12 Hb_001318_230 0.1478925767 - - Boron transporter, putative [Ricinus communis]
13 Hb_009787_020 0.1486645229 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
14 Hb_000181_390 0.1563710054 - - unknown [Lotus japonicus]
15 Hb_000201_070 0.1568443566 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
16 Hb_007292_050 0.1597058651 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
17 Hb_005618_010 0.1608407717 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]
18 Hb_002170_010 0.1609683324 - - hypothetical protein JCGZ_25046 [Jatropha curcas]
19 Hb_000365_190 0.1645012895 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
20 Hb_000732_100 0.164917975 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]

Gene co-expression network

sample Hb_001295_050 Hb_001295_050 Hb_005048_090 Hb_005048_090 Hb_001295_050--Hb_005048_090 Hb_020301_010 Hb_020301_010 Hb_001295_050--Hb_020301_010 Hb_003145_030 Hb_003145_030 Hb_001295_050--Hb_003145_030 Hb_000984_110 Hb_000984_110 Hb_001295_050--Hb_000984_110 Hb_010267_030 Hb_010267_030 Hb_001295_050--Hb_010267_030 Hb_000172_070 Hb_000172_070 Hb_001295_050--Hb_000172_070 Hb_005048_090--Hb_000984_110 Hb_000230_550 Hb_000230_550 Hb_005048_090--Hb_000230_550 Hb_005048_090--Hb_010267_030 Hb_005048_090--Hb_000172_070 Hb_002170_010 Hb_002170_010 Hb_005048_090--Hb_002170_010 Hb_005643_080 Hb_005643_080 Hb_020301_010--Hb_005643_080 Hb_020301_010--Hb_000172_070 Hb_005396_030 Hb_005396_030 Hb_020301_010--Hb_005396_030 Hb_004586_230 Hb_004586_230 Hb_020301_010--Hb_004586_230 Hb_020301_010--Hb_010267_030 Hb_000974_030 Hb_000974_030 Hb_003145_030--Hb_000974_030 Hb_003145_030--Hb_005048_090 Hb_003145_030--Hb_000230_550 Hb_000181_390 Hb_000181_390 Hb_003145_030--Hb_000181_390 Hb_003145_030--Hb_010267_030 Hb_061783_010 Hb_061783_010 Hb_000984_110--Hb_061783_010 Hb_000984_110--Hb_000230_550 Hb_000984_110--Hb_000172_070 Hb_004102_200 Hb_004102_200 Hb_000984_110--Hb_004102_200 Hb_000201_070 Hb_000201_070 Hb_010267_030--Hb_000201_070 Hb_010267_030--Hb_000172_070 Hb_005618_010 Hb_005618_010 Hb_010267_030--Hb_005618_010 Hb_010267_030--Hb_002170_010 Hb_112145_010 Hb_112145_010 Hb_010267_030--Hb_112145_010 Hb_000172_070--Hb_005618_010 Hb_007292_050 Hb_007292_050 Hb_000172_070--Hb_007292_050 Hb_000172_070--Hb_000230_550 Hb_000172_070--Hb_002170_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.062677 6.43685 0.503456 6.67989 0.0251046 0.0286446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0573956 0 0 0.12739 2.19933

CAGE analysis