Hb_003145_030

Information

Type -
Description -
Location Contig3145: 21550-21984
Sequence    

Annotation

kegg
ID rcu:RCOM_1571520
description hypothetical protein
nr
ID XP_002533413.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T594
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0200050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33225: 21386-22373
cDNA
(Sanger)
(ID:Location)		 038_O14.ab1: 21602-22370 , 047_I09.ab1: 21618-22370

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003145_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000974_030 0.1007087163 - - PREDICTED: uncharacterized protein LOC105128463 isoform X1 [Populus euphratica]
3 Hb_005048_090 0.1029861278 - - PREDICTED: glycine-rich cell wall structural protein 2 [Jatropha curcas]
4 Hb_001295_050 0.108124632 - - PREDICTED: uncharacterized protein LOC101503108 isoform X1 [Cicer arietinum]
5 Hb_000230_550 0.1212924817 - - PREDICTED: adenylate isopentenyltransferase 5, chloroplastic [Jatropha curcas]
6 Hb_000181_390 0.1374720162 - - unknown [Lotus japonicus]
7 Hb_010267_030 0.1401367339 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
8 Hb_000984_110 0.1495133202 - - hypothetical protein JCGZ_15953 [Jatropha curcas]
9 Hb_105814_020 0.1507014441 - - berberine bridge enzyme [Hevea brasiliensis]
10 Hb_000172_070 0.1586743596 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
11 Hb_100526_020 0.1610466086 - - hypothetical protein POPTR_0003s09340g [Populus trichocarpa]
12 Hb_000201_070 0.161422533 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
13 Hb_004218_290 0.1637036697 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 6 isoform X2 [Jatropha curcas]
14 Hb_009403_010 0.16622662 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
15 Hb_123078_010 0.1676998648 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
16 Hb_002170_010 0.1718173231 - - hypothetical protein JCGZ_25046 [Jatropha curcas]
17 Hb_004659_110 0.1726989552 - - PREDICTED: BURP domain-containing protein 3-like [Jatropha curcas]
18 Hb_002267_030 0.1729579492 - - hypothetical protein JCGZ_24883 [Jatropha curcas]
19 Hb_001907_050 0.1742515743 - - Receptor like protein 6, putative [Theobroma cacao]
20 Hb_009787_020 0.1750333258 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]

Gene co-expression network

sample Hb_003145_030 Hb_003145_030 Hb_000974_030 Hb_000974_030 Hb_003145_030--Hb_000974_030 Hb_005048_090 Hb_005048_090 Hb_003145_030--Hb_005048_090 Hb_001295_050 Hb_001295_050 Hb_003145_030--Hb_001295_050 Hb_000230_550 Hb_000230_550 Hb_003145_030--Hb_000230_550 Hb_000181_390 Hb_000181_390 Hb_003145_030--Hb_000181_390 Hb_010267_030 Hb_010267_030 Hb_003145_030--Hb_010267_030 Hb_100526_020 Hb_100526_020 Hb_000974_030--Hb_100526_020 Hb_000974_030--Hb_005048_090 Hb_000096_050 Hb_000096_050 Hb_000974_030--Hb_000096_050 Hb_000974_030--Hb_000181_390 Hb_009403_010 Hb_009403_010 Hb_000974_030--Hb_009403_010 Hb_000984_110 Hb_000984_110 Hb_005048_090--Hb_000984_110 Hb_005048_090--Hb_000230_550 Hb_005048_090--Hb_010267_030 Hb_005048_090--Hb_001295_050 Hb_000172_070 Hb_000172_070 Hb_005048_090--Hb_000172_070 Hb_002170_010 Hb_002170_010 Hb_005048_090--Hb_002170_010 Hb_020301_010 Hb_020301_010 Hb_001295_050--Hb_020301_010 Hb_001295_050--Hb_000984_110 Hb_001295_050--Hb_010267_030 Hb_001295_050--Hb_000172_070 Hb_000230_550--Hb_002170_010 Hb_000230_550--Hb_000172_070 Hb_000230_550--Hb_010267_030 Hb_000230_550--Hb_000984_110 Hb_000375_150 Hb_000375_150 Hb_000181_390--Hb_000375_150 Hb_005618_010 Hb_005618_010 Hb_000181_390--Hb_005618_010 Hb_026415_010 Hb_026415_010 Hb_000181_390--Hb_026415_010 Hb_004450_030 Hb_004450_030 Hb_000181_390--Hb_004450_030 Hb_000181_390--Hb_000172_070 Hb_010417_110 Hb_010417_110 Hb_000181_390--Hb_010417_110 Hb_000201_070 Hb_000201_070 Hb_010267_030--Hb_000201_070 Hb_010267_030--Hb_000172_070 Hb_010267_030--Hb_005618_010 Hb_010267_030--Hb_002170_010 Hb_112145_010 Hb_112145_010 Hb_010267_030--Hb_112145_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.849875 0.0654269 0.691521 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.272949

CAGE analysis