Hb_000974_030

Information

Type -
Description -
Location Contig974: 91742-92477
Sequence    

Annotation

kegg
ID cit:102607511
description uncharacterized LOC102607511
nr
ID XP_011028454.1
description PREDICTED: uncharacterized protein LOC105128463 isoform X1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID V4UXR9
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003316mg PE=4 SV=1
Gene Ontology
ID GO:0008168
description methyltransferase pmt15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000974_030 0.0 - - PREDICTED: uncharacterized protein LOC105128463 isoform X1 [Populus euphratica]
2 Hb_100526_020 0.0888614925 - - hypothetical protein POPTR_0003s09340g [Populus trichocarpa]
3 Hb_003145_030 0.1007087163 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005048_090 0.1069249646 - - PREDICTED: glycine-rich cell wall structural protein 2 [Jatropha curcas]
5 Hb_000096_050 0.1168276076 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000181_390 0.1313694497 - - unknown [Lotus japonicus]
7 Hb_009403_010 0.1326365 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
8 Hb_000984_110 0.1368285242 - - hypothetical protein JCGZ_15953 [Jatropha curcas]
9 Hb_000230_550 0.1389810348 - - PREDICTED: adenylate isopentenyltransferase 5, chloroplastic [Jatropha curcas]
10 Hb_001295_050 0.1442977293 - - PREDICTED: uncharacterized protein LOC101503108 isoform X1 [Cicer arietinum]
11 Hb_000172_070 0.1475246726 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
12 Hb_000813_090 0.1509019188 - - hypothetical protein CARUB_v10019318mg [Capsella rubella]
13 Hb_004102_200 0.1534084694 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
14 Hb_000930_020 0.1538062241 - - hypothetical protein PRUPE_ppa026493mg [Prunus persica]
15 Hb_000041_160 0.1561476242 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
16 Hb_000805_220 0.156750314 - - polyprotein [Citrus endogenous pararetrovirus]
17 Hb_002250_140 0.157533788 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 isoform X1 [Populus euphratica]
18 Hb_004730_010 0.1595213189 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
19 Hb_105814_020 0.1609219093 - - berberine bridge enzyme [Hevea brasiliensis]
20 Hb_007103_020 0.1619075764 - - hypothetical protein POPTR_0007s04191g [Populus trichocarpa]

Gene co-expression network

sample Hb_000974_030 Hb_000974_030 Hb_100526_020 Hb_100526_020 Hb_000974_030--Hb_100526_020 Hb_003145_030 Hb_003145_030 Hb_000974_030--Hb_003145_030 Hb_005048_090 Hb_005048_090 Hb_000974_030--Hb_005048_090 Hb_000096_050 Hb_000096_050 Hb_000974_030--Hb_000096_050 Hb_000181_390 Hb_000181_390 Hb_000974_030--Hb_000181_390 Hb_009403_010 Hb_009403_010 Hb_000974_030--Hb_009403_010 Hb_100526_020--Hb_000096_050 Hb_000930_020 Hb_000930_020 Hb_100526_020--Hb_000930_020 Hb_000805_220 Hb_000805_220 Hb_100526_020--Hb_000805_220 Hb_001379_080 Hb_001379_080 Hb_100526_020--Hb_001379_080 Hb_000984_110 Hb_000984_110 Hb_100526_020--Hb_000984_110 Hb_003145_030--Hb_005048_090 Hb_001295_050 Hb_001295_050 Hb_003145_030--Hb_001295_050 Hb_000230_550 Hb_000230_550 Hb_003145_030--Hb_000230_550 Hb_003145_030--Hb_000181_390 Hb_010267_030 Hb_010267_030 Hb_003145_030--Hb_010267_030 Hb_005048_090--Hb_000984_110 Hb_005048_090--Hb_000230_550 Hb_005048_090--Hb_010267_030 Hb_005048_090--Hb_001295_050 Hb_000172_070 Hb_000172_070 Hb_005048_090--Hb_000172_070 Hb_002170_010 Hb_002170_010 Hb_005048_090--Hb_002170_010 Hb_000096_050--Hb_000930_020 Hb_156850_050 Hb_156850_050 Hb_000096_050--Hb_156850_050 Hb_002060_070 Hb_002060_070 Hb_000096_050--Hb_002060_070 Hb_000752_040 Hb_000752_040 Hb_000096_050--Hb_000752_040 Hb_000375_150 Hb_000375_150 Hb_000181_390--Hb_000375_150 Hb_005618_010 Hb_005618_010 Hb_000181_390--Hb_005618_010 Hb_026415_010 Hb_026415_010 Hb_000181_390--Hb_026415_010 Hb_004450_030 Hb_004450_030 Hb_000181_390--Hb_004450_030 Hb_000181_390--Hb_000172_070 Hb_010417_110 Hb_010417_110 Hb_000181_390--Hb_010417_110 Hb_009403_010--Hb_026415_010 Hb_004879_030 Hb_004879_030 Hb_009403_010--Hb_004879_030 Hb_000813_090 Hb_000813_090 Hb_009403_010--Hb_000813_090 Hb_000325_070 Hb_000325_070 Hb_009403_010--Hb_000325_070 Hb_105814_020 Hb_105814_020 Hb_009403_010--Hb_105814_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.204103 0.0261837 0.194404 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.124441

CAGE analysis