Hb_000805_220

Information

Type -
Description -
Location Contig805: 206189-207022
Sequence    

Annotation

kegg
ID cit:102627079
description uncharacterized LOC102627079
nr
ID AHC13197.1
description polyprotein [Citrus endogenous pararetrovirus]
swissprot
ID -
description -
trembl
ID V9QEC8
description Polyprotein OS=Citrus endogenous pararetrovirus PE=4 SV=1
Gene Ontology
ID GO:0003824
description polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000805_220 0.0 - - polyprotein [Citrus endogenous pararetrovirus]
2 Hb_006501_140 0.1072804588 - - PREDICTED: MATE efflux family protein 9-like [Jatropha curcas]
3 Hb_009492_020 0.1122639703 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
4 Hb_000930_020 0.1130584237 - - hypothetical protein PRUPE_ppa026493mg [Prunus persica]
5 Hb_002060_070 0.1350429513 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
6 Hb_100526_020 0.1389000241 - - hypothetical protein POPTR_0003s09340g [Populus trichocarpa]
7 Hb_000096_050 0.1414169179 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003589_100 0.1506857928 - - hypothetical protein JCGZ_03338 [Jatropha curcas]
9 Hb_001379_080 0.1508124995 - - PREDICTED: WAT1-related protein At5g07050-like [Vitis vinifera]
10 Hb_000974_030 0.156750314 - - PREDICTED: uncharacterized protein LOC105128463 isoform X1 [Populus euphratica]
11 Hb_003145_030 0.175614656 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000984_110 0.1888632797 - - hypothetical protein JCGZ_15953 [Jatropha curcas]
13 Hb_002837_080 0.1889977398 - - acyltransferase, putative [Ricinus communis]
14 Hb_001907_050 0.1904569184 - - Receptor like protein 6, putative [Theobroma cacao]
15 Hb_082972_010 0.1925317861 - - -
16 Hb_001295_050 0.1969210853 - - PREDICTED: uncharacterized protein LOC101503108 isoform X1 [Cicer arietinum]
17 Hb_005048_090 0.1981377869 - - PREDICTED: glycine-rich cell wall structural protein 2 [Jatropha curcas]
18 Hb_030949_010 0.2008780985 - - hypothetical protein POPTR_0001s24140g [Populus trichocarpa]
19 Hb_156850_050 0.201293569 - - PREDICTED: uncharacterized protein LOC105635250 [Jatropha curcas]
20 Hb_137338_010 0.2087110625 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000805_220 Hb_000805_220 Hb_006501_140 Hb_006501_140 Hb_000805_220--Hb_006501_140 Hb_009492_020 Hb_009492_020 Hb_000805_220--Hb_009492_020 Hb_000930_020 Hb_000930_020 Hb_000805_220--Hb_000930_020 Hb_002060_070 Hb_002060_070 Hb_000805_220--Hb_002060_070 Hb_100526_020 Hb_100526_020 Hb_000805_220--Hb_100526_020 Hb_000096_050 Hb_000096_050 Hb_000805_220--Hb_000096_050 Hb_006501_140--Hb_100526_020 Hb_006501_140--Hb_000930_020 Hb_105814_020 Hb_105814_020 Hb_006501_140--Hb_105814_020 Hb_003145_030 Hb_003145_030 Hb_006501_140--Hb_003145_030 Hb_000974_030 Hb_000974_030 Hb_006501_140--Hb_000974_030 Hb_003589_100 Hb_003589_100 Hb_009492_020--Hb_003589_100 Hb_002837_080 Hb_002837_080 Hb_009492_020--Hb_002837_080 Hb_009492_020--Hb_002060_070 Hb_156850_050 Hb_156850_050 Hb_009492_020--Hb_156850_050 Hb_009492_020--Hb_000930_020 Hb_000930_020--Hb_000096_050 Hb_000930_020--Hb_100526_020 Hb_000930_020--Hb_002060_070 Hb_000930_020--Hb_000974_030 Hb_082972_010 Hb_082972_010 Hb_002060_070--Hb_082972_010 Hb_001817_110 Hb_001817_110 Hb_002060_070--Hb_001817_110 Hb_002060_070--Hb_002837_080 Hb_001379_080 Hb_001379_080 Hb_002060_070--Hb_001379_080 Hb_002060_070--Hb_000096_050 Hb_100526_020--Hb_000096_050 Hb_100526_020--Hb_000974_030 Hb_100526_020--Hb_001379_080 Hb_000984_110 Hb_000984_110 Hb_100526_020--Hb_000984_110 Hb_000096_050--Hb_000974_030 Hb_000096_050--Hb_156850_050 Hb_000752_040 Hb_000752_040 Hb_000096_050--Hb_000752_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.149133 0 0.149962 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.101246

CAGE analysis