Hb_000096_050

Information

Type -
Description -
Location Contig96: 54288-54782
Sequence    

Annotation

kegg
ID rcu:RCOM_0581340
description hypothetical protein
nr
ID XP_002525295.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SH26
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0581340 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000096_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_100526_020 0.0841166289 - - hypothetical protein POPTR_0003s09340g [Populus trichocarpa]
3 Hb_000930_020 0.1055644855 - - hypothetical protein PRUPE_ppa026493mg [Prunus persica]
4 Hb_000974_030 0.1168276076 - - PREDICTED: uncharacterized protein LOC105128463 isoform X1 [Populus euphratica]
5 Hb_156850_050 0.1190381102 - - PREDICTED: uncharacterized protein LOC105635250 [Jatropha curcas]
6 Hb_002060_070 0.1204908425 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
7 Hb_000752_040 0.1368581648 - - PREDICTED: uncharacterized protein LOC104884990 [Beta vulgaris subsp. vulgaris]
8 Hb_000805_220 0.1414169179 - - polyprotein [Citrus endogenous pararetrovirus]
9 Hb_030949_010 0.1468754221 - - hypothetical protein POPTR_0001s24140g [Populus trichocarpa]
10 Hb_004102_200 0.1519254412 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
11 Hb_082972_010 0.1527381954 - - -
12 Hb_009492_020 0.1531734862 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
13 Hb_001379_080 0.1559384562 - - PREDICTED: WAT1-related protein At5g07050-like [Vitis vinifera]
14 Hb_007103_020 0.1587409382 - - hypothetical protein POPTR_0007s04191g [Populus trichocarpa]
15 Hb_002837_080 0.1600131029 - - acyltransferase, putative [Ricinus communis]
16 Hb_029238_040 0.1613166832 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
17 Hb_005790_010 0.1634022888 - - hypothetical protein POPTR_0004s24080g [Populus trichocarpa]
18 Hb_002785_010 0.1636207784 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
19 Hb_032202_010 0.1646613746 - - PREDICTED: subtilisin-like protease SBT1.1 [Jatropha curcas]
20 Hb_152277_010 0.1648798394 - - PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000096_050 Hb_000096_050 Hb_100526_020 Hb_100526_020 Hb_000096_050--Hb_100526_020 Hb_000930_020 Hb_000930_020 Hb_000096_050--Hb_000930_020 Hb_000974_030 Hb_000974_030 Hb_000096_050--Hb_000974_030 Hb_156850_050 Hb_156850_050 Hb_000096_050--Hb_156850_050 Hb_002060_070 Hb_002060_070 Hb_000096_050--Hb_002060_070 Hb_000752_040 Hb_000752_040 Hb_000096_050--Hb_000752_040 Hb_100526_020--Hb_000974_030 Hb_100526_020--Hb_000930_020 Hb_000805_220 Hb_000805_220 Hb_100526_020--Hb_000805_220 Hb_001379_080 Hb_001379_080 Hb_100526_020--Hb_001379_080 Hb_000984_110 Hb_000984_110 Hb_100526_020--Hb_000984_110 Hb_000930_020--Hb_000805_220 Hb_000930_020--Hb_002060_070 Hb_009492_020 Hb_009492_020 Hb_000930_020--Hb_009492_020 Hb_000930_020--Hb_000974_030 Hb_003145_030 Hb_003145_030 Hb_000974_030--Hb_003145_030 Hb_005048_090 Hb_005048_090 Hb_000974_030--Hb_005048_090 Hb_000181_390 Hb_000181_390 Hb_000974_030--Hb_000181_390 Hb_009403_010 Hb_009403_010 Hb_000974_030--Hb_009403_010 Hb_029238_040 Hb_029238_040 Hb_156850_050--Hb_029238_040 Hb_004102_200 Hb_004102_200 Hb_156850_050--Hb_004102_200 Hb_007579_030 Hb_007579_030 Hb_156850_050--Hb_007579_030 Hb_061783_010 Hb_061783_010 Hb_156850_050--Hb_061783_010 Hb_001401_120 Hb_001401_120 Hb_156850_050--Hb_001401_120 Hb_082972_010 Hb_082972_010 Hb_002060_070--Hb_082972_010 Hb_001817_110 Hb_001817_110 Hb_002060_070--Hb_001817_110 Hb_002837_080 Hb_002837_080 Hb_002060_070--Hb_002837_080 Hb_002060_070--Hb_001379_080 Hb_032202_010 Hb_032202_010 Hb_000752_040--Hb_032202_010 Hb_003008_020 Hb_003008_020 Hb_000752_040--Hb_003008_020 Hb_007666_010 Hb_007666_010 Hb_000752_040--Hb_007666_010 Hb_003050_330 Hb_003050_330 Hb_000752_040--Hb_003050_330 Hb_002785_010 Hb_002785_010 Hb_000752_040--Hb_002785_010 Hb_005018_030 Hb_005018_030 Hb_000752_040--Hb_005018_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.520986 0.0448601 0.670774 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.599849

CAGE analysis