Hb_000181_390

Information

Type -
Description -
Location Contig181: 355765-356234
Sequence    

Annotation

kegg
ID atr:s00068p00182880
description AMTR_s00068p00182880; hypothetical protein
nr
ID AFK34468.1
description unknown [Lotus japonicus]
swissprot
ID -
description -
trembl
ID I3S2H6
description Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
Gene Ontology
ID GO:0005622
description metallothionein-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000181_390 0.0 - - unknown [Lotus japonicus]
2 Hb_000375_150 0.099134866 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005618_010 0.1006250225 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]
4 Hb_026415_010 0.1194221256 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
5 Hb_004450_030 0.1210550089 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000172_070 0.1220668341 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
7 Hb_010417_110 0.1223372927 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000325_070 0.1296977694 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_000974_030 0.1313694497 - - PREDICTED: uncharacterized protein LOC105128463 isoform X1 [Populus euphratica]
10 Hb_013691_060 0.1338751092 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
11 Hb_005048_090 0.1349991683 - - PREDICTED: glycine-rich cell wall structural protein 2 [Jatropha curcas]
12 Hb_000201_070 0.1359164658 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
13 Hb_003145_030 0.1374720162 - - conserved hypothetical protein [Ricinus communis]
14 Hb_010267_030 0.139831751 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
15 Hb_002725_080 0.14235201 - - protein phosphatase 2c, putative [Ricinus communis]
16 Hb_050847_030 0.143284458 - - PREDICTED: cytochrome P450 714A1-like [Populus euphratica]
17 Hb_155015_020 0.1436264076 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
18 Hb_000230_550 0.1454604512 - - PREDICTED: adenylate isopentenyltransferase 5, chloroplastic [Jatropha curcas]
19 Hb_112145_010 0.1461143615 - - kinase, putative [Ricinus communis]
20 Hb_113396_010 0.147006469 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_000181_390 Hb_000181_390 Hb_000375_150 Hb_000375_150 Hb_000181_390--Hb_000375_150 Hb_005618_010 Hb_005618_010 Hb_000181_390--Hb_005618_010 Hb_026415_010 Hb_026415_010 Hb_000181_390--Hb_026415_010 Hb_004450_030 Hb_004450_030 Hb_000181_390--Hb_004450_030 Hb_000172_070 Hb_000172_070 Hb_000181_390--Hb_000172_070 Hb_010417_110 Hb_010417_110 Hb_000181_390--Hb_010417_110 Hb_000329_170 Hb_000329_170 Hb_000375_150--Hb_000329_170 Hb_005694_150 Hb_005694_150 Hb_000375_150--Hb_005694_150 Hb_000325_070 Hb_000325_070 Hb_000375_150--Hb_000325_070 Hb_002725_080 Hb_002725_080 Hb_000375_150--Hb_002725_080 Hb_050847_030 Hb_050847_030 Hb_000375_150--Hb_050847_030 Hb_005618_010--Hb_000172_070 Hb_007292_050 Hb_007292_050 Hb_005618_010--Hb_007292_050 Hb_010267_030 Hb_010267_030 Hb_005618_010--Hb_010267_030 Hb_112145_010 Hb_112145_010 Hb_005618_010--Hb_112145_010 Hb_005618_010--Hb_002725_080 Hb_026415_010--Hb_000325_070 Hb_004879_030 Hb_004879_030 Hb_026415_010--Hb_004879_030 Hb_009403_010 Hb_009403_010 Hb_026415_010--Hb_009403_010 Hb_000813_090 Hb_000813_090 Hb_026415_010--Hb_000813_090 Hb_115114_010 Hb_115114_010 Hb_026415_010--Hb_115114_010 Hb_152414_010 Hb_152414_010 Hb_026415_010--Hb_152414_010 Hb_004450_030--Hb_010417_110 Hb_004450_030--Hb_005618_010 Hb_000258_230 Hb_000258_230 Hb_004450_030--Hb_000258_230 Hb_000068_040 Hb_000068_040 Hb_004450_030--Hb_000068_040 Hb_097634_010 Hb_097634_010 Hb_004450_030--Hb_097634_010 Hb_000172_070--Hb_010267_030 Hb_005048_090 Hb_005048_090 Hb_000172_070--Hb_005048_090 Hb_000172_070--Hb_007292_050 Hb_000230_550 Hb_000230_550 Hb_000172_070--Hb_000230_550 Hb_002170_010 Hb_002170_010 Hb_000172_070--Hb_002170_010 Hb_010417_110--Hb_002725_080 Hb_009557_080 Hb_009557_080 Hb_010417_110--Hb_009557_080 Hb_006002_020 Hb_006002_020 Hb_010417_110--Hb_006002_020 Hb_010417_110--Hb_000375_150 Hb_010417_110--Hb_005618_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2366.1 593.432 1849.37 10.8889 5.93149
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.0248 2.85161 0 3.62071 912.773

CAGE analysis