Hb_000068_040

Information

Type -
Description -
Location Contig68: 136382-138492
Sequence    

Annotation

kegg
ID rcu:RCOM_1711500
description Inter-alpha-trypsin inhibitor heavy chain H3 precursor, putative
nr
ID XP_002524155.1
description Inter-alpha-trypsin inhibitor heavy chain H3 precursor, putative [Ricinus communis]
swissprot
ID Q55874
description Uncharacterized protein sll0103 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0103 PE=3 SV=1
trembl
ID B9SDT6
description Inter-alpha-trypsin inhibitor heavy chain H3, putative OS=Ricinus communis GN=RCOM_1711500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000068_040 0.0 - - Inter-alpha-trypsin inhibitor heavy chain H3 precursor, putative [Ricinus communis]
2 Hb_004450_030 0.1496834041 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003090_170 0.1597741495 - - PREDICTED: uncharacterized protein LOC105646673 [Jatropha curcas]
4 Hb_000258_230 0.1929443137 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005790_010 0.2066905365 - - hypothetical protein POPTR_0004s24080g [Populus trichocarpa]
6 Hb_186312_010 0.2081414414 - - PREDICTED: O-acyltransferase WSD1-like [Populus euphratica]
7 Hb_003209_090 0.2084857019 - - Xyloglucan endotransglucosylase/hydrolase family protein [Theobroma cacao]
8 Hb_152277_010 0.2095888093 - - PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like [Jatropha curcas]
9 Hb_010417_110 0.2112817688 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007103_020 0.2116353758 - - hypothetical protein POPTR_0007s04191g [Populus trichocarpa]
11 Hb_000201_010 0.2153467735 - - unnamed protein product [Vitis vinifera]
12 Hb_009557_080 0.2169446973 - - PREDICTED: glutaredoxin-C9-like [Populus euphratica]
13 Hb_000813_090 0.2170034546 - - hypothetical protein CARUB_v10019318mg [Capsella rubella]
14 Hb_097634_010 0.220466998 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
15 Hb_002066_010 0.2208626192 - - PREDICTED: acetylglutamate kinase, chloroplastic [Jatropha curcas]
16 Hb_000922_350 0.2220929807 - - PREDICTED: uncharacterized protein LOC105640367 [Jatropha curcas]
17 Hb_000181_390 0.2229509618 - - unknown [Lotus japonicus]
18 Hb_026050_010 0.2230639192 - - protein phosphatase 2c, putative [Ricinus communis]
19 Hb_032202_010 0.2238377048 - - PREDICTED: subtilisin-like protease SBT1.1 [Jatropha curcas]
20 Hb_000252_260 0.2242353955 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]

Gene co-expression network

sample Hb_000068_040 Hb_000068_040 Hb_004450_030 Hb_004450_030 Hb_000068_040--Hb_004450_030 Hb_003090_170 Hb_003090_170 Hb_000068_040--Hb_003090_170 Hb_000258_230 Hb_000258_230 Hb_000068_040--Hb_000258_230 Hb_005790_010 Hb_005790_010 Hb_000068_040--Hb_005790_010 Hb_186312_010 Hb_186312_010 Hb_000068_040--Hb_186312_010 Hb_003209_090 Hb_003209_090 Hb_000068_040--Hb_003209_090 Hb_010417_110 Hb_010417_110 Hb_004450_030--Hb_010417_110 Hb_000181_390 Hb_000181_390 Hb_004450_030--Hb_000181_390 Hb_005618_010 Hb_005618_010 Hb_004450_030--Hb_005618_010 Hb_004450_030--Hb_000258_230 Hb_097634_010 Hb_097634_010 Hb_004450_030--Hb_097634_010 Hb_003090_170--Hb_186312_010 Hb_007103_020 Hb_007103_020 Hb_003090_170--Hb_007103_020 Hb_003090_170--Hb_000258_230 Hb_003090_170--Hb_005790_010 Hb_026050_010 Hb_026050_010 Hb_003090_170--Hb_026050_010 Hb_009771_040 Hb_009771_040 Hb_000258_230--Hb_009771_040 Hb_002250_140 Hb_002250_140 Hb_000258_230--Hb_002250_140 Hb_000258_230--Hb_007103_020 Hb_152277_010 Hb_152277_010 Hb_000258_230--Hb_152277_010 Hb_000258_230--Hb_026050_010 Hb_000201_010 Hb_000201_010 Hb_000258_230--Hb_000201_010 Hb_005790_010--Hb_152277_010 Hb_005790_010--Hb_000258_230 Hb_001158_250 Hb_001158_250 Hb_005790_010--Hb_001158_250 Hb_005790_010--Hb_007103_020 Hb_000622_030 Hb_000622_030 Hb_005790_010--Hb_000622_030 Hb_001232_040 Hb_001232_040 Hb_005790_010--Hb_001232_040 Hb_002076_030 Hb_002076_030 Hb_186312_010--Hb_002076_030 Hb_000369_040 Hb_000369_040 Hb_186312_010--Hb_000369_040 Hb_002631_110 Hb_002631_110 Hb_186312_010--Hb_002631_110 Hb_032202_010 Hb_032202_010 Hb_186312_010--Hb_032202_010 Hb_000371_120 Hb_000371_120 Hb_003209_090--Hb_000371_120 Hb_182970_010 Hb_182970_010 Hb_003209_090--Hb_182970_010 Hb_003209_090--Hb_097634_010 Hb_002400_040 Hb_002400_040 Hb_003209_090--Hb_002400_040 Hb_004241_200 Hb_004241_200 Hb_003209_090--Hb_004241_200 Hb_000077_160 Hb_000077_160 Hb_003209_090--Hb_000077_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.524408 0.134383 0.475404 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0751217 0.0591058 0 0.00784568 0.456683

CAGE analysis