Hb_002076_030

Information

Type -
Description -
Location Contig2076: 34316-38931
Sequence    

Annotation

kegg
ID pper:PRUPE_ppb019121mg
description hypothetical protein
nr
ID XP_012487705.1
description PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
swissprot
ID P0CT43
description Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-8 PE=3 SV=1
trembl
ID M5XLP5
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb019121mg PE=4 SV=1
Gene Ontology
ID GO:0046872
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002076_030 0.0 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
2 Hb_171900_030 0.1767847489 transcription factor TF Family: MYB PREDICTED: myb-related protein MYBAS2 [Jatropha curcas]
3 Hb_001771_060 0.1890062383 - - hypothetical protein B456_012G144100 [Gossypium raimondii]
4 Hb_004108_120 0.1981188327 - - PREDICTED: EID1-like F-box protein 3 [Jatropha curcas]
5 Hb_186312_010 0.2018885869 - - PREDICTED: O-acyltransferase WSD1-like [Populus euphratica]
6 Hb_002999_140 0.2187553682 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
7 Hb_002006_120 0.2204968861 - - PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Jatropha curcas]
8 Hb_171693_010 0.2285330829 - - hypothetical protein JCGZ_26531 [Jatropha curcas]
9 Hb_007425_020 0.2347921958 transcription factor TF Family: ERF PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like [Jatropha curcas]
10 Hb_008078_020 0.2416888492 - - hypothetical protein JCGZ_01297 [Jatropha curcas]
11 Hb_000808_260 0.2451221551 - - hypothetical protein RCOM_1434920 [Ricinus communis]
12 Hb_028285_020 0.2466176128 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
13 Hb_008890_030 0.2486026573 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_001754_200 0.2486246888 - - PREDICTED: U1 small nuclear ribonucleoprotein C [Jatropha curcas]
15 Hb_004143_140 0.2492339305 - - glycosyltransferase, partial [Arabidopsis thaliana]
16 Hb_001046_040 0.2510983501 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_003090_170 0.2563227265 - - PREDICTED: uncharacterized protein LOC105646673 [Jatropha curcas]
18 Hb_013405_100 0.2566063737 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 8 [Jatropha curcas]
19 Hb_000575_090 0.2567353326 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 24 [Populus euphratica]
20 Hb_002871_170 0.25759667 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]

Gene co-expression network

sample Hb_002076_030 Hb_002076_030 Hb_171900_030 Hb_171900_030 Hb_002076_030--Hb_171900_030 Hb_001771_060 Hb_001771_060 Hb_002076_030--Hb_001771_060 Hb_004108_120 Hb_004108_120 Hb_002076_030--Hb_004108_120 Hb_186312_010 Hb_186312_010 Hb_002076_030--Hb_186312_010 Hb_002999_140 Hb_002999_140 Hb_002076_030--Hb_002999_140 Hb_002006_120 Hb_002006_120 Hb_002076_030--Hb_002006_120 Hb_008890_030 Hb_008890_030 Hb_171900_030--Hb_008890_030 Hb_000879_240 Hb_000879_240 Hb_171900_030--Hb_000879_240 Hb_171900_030--Hb_004108_120 Hb_011232_010 Hb_011232_010 Hb_171900_030--Hb_011232_010 Hb_171900_030--Hb_001771_060 Hb_001771_060--Hb_004108_120 Hb_002999_130 Hb_002999_130 Hb_001771_060--Hb_002999_130 Hb_028285_020 Hb_028285_020 Hb_001771_060--Hb_028285_020 Hb_001771_060--Hb_002999_140 Hb_009557_080 Hb_009557_080 Hb_001771_060--Hb_009557_080 Hb_000656_260 Hb_000656_260 Hb_001771_060--Hb_000656_260 Hb_004108_120--Hb_028285_020 Hb_004108_120--Hb_002999_130 Hb_019026_040 Hb_019026_040 Hb_004108_120--Hb_019026_040 Hb_152414_010 Hb_152414_010 Hb_004108_120--Hb_152414_010 Hb_073171_050 Hb_073171_050 Hb_004108_120--Hb_073171_050 Hb_003090_170 Hb_003090_170 Hb_186312_010--Hb_003090_170 Hb_000369_040 Hb_000369_040 Hb_186312_010--Hb_000369_040 Hb_002631_110 Hb_002631_110 Hb_186312_010--Hb_002631_110 Hb_032202_010 Hb_032202_010 Hb_186312_010--Hb_032202_010 Hb_000068_040 Hb_000068_040 Hb_186312_010--Hb_000068_040 Hb_019837_010 Hb_019837_010 Hb_002999_140--Hb_019837_010 Hb_000808_260 Hb_000808_260 Hb_002999_140--Hb_000808_260 Hb_004864_010 Hb_004864_010 Hb_002999_140--Hb_004864_010 Hb_003126_010 Hb_003126_010 Hb_002999_140--Hb_003126_010 Hb_000594_150 Hb_000594_150 Hb_002999_140--Hb_000594_150 Hb_003905_040 Hb_003905_040 Hb_002006_120--Hb_003905_040 Hb_007254_050 Hb_007254_050 Hb_002006_120--Hb_007254_050 Hb_033312_090 Hb_033312_090 Hb_002006_120--Hb_033312_090 Hb_149484_010 Hb_149484_010 Hb_002006_120--Hb_149484_010 Hb_061350_010 Hb_061350_010 Hb_002006_120--Hb_061350_010 Hb_004030_070 Hb_004030_070 Hb_002006_120--Hb_004030_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.04365 0.0109003 0.0110631 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0131387 0 0.00521551 0.0279601

CAGE analysis