Hb_008890_030

Information

Type -
Description -
Location Contig8890: 13657-17560
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008890_030 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_171900_030 0.1668962343 transcription factor TF Family: MYB PREDICTED: myb-related protein MYBAS2 [Jatropha curcas]
3 Hb_001629_010 0.240729063 - - Disease resistance protein RPM1, putative [Theobroma cacao]
4 Hb_002076_030 0.2486026573 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
5 Hb_002498_150 0.2621748303 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011232_010 0.2792250185 - - Leucine-rich repeat receptor-like protein kinase family protein [Theobroma cacao]
7 Hb_095449_010 0.2948083808 - - PREDICTED: low-temperature-induced 65 kDa protein-like [Jatropha curcas]
8 Hb_008078_020 0.2950261324 - - hypothetical protein JCGZ_01297 [Jatropha curcas]
9 Hb_007166_030 0.3055067796 - - -
10 Hb_054865_080 0.314303148 - - PREDICTED: uncharacterized protein LOC105642789 [Jatropha curcas]
11 Hb_005545_080 0.3145440219 - - hypothetical protein JCGZ_01293 [Jatropha curcas]
12 Hb_000297_100 0.3190657736 transcription factor TF Family: NAC NAC transcription factor 038 [Jatropha curcas]
13 Hb_000243_310 0.3220438686 - - lactoylglutathione lyase, putative [Ricinus communis]
14 Hb_002284_030 0.3240868624 - - PREDICTED: xylem cysteine proteinase 2 [Jatropha curcas]
15 Hb_000126_040 0.3298500647 - - kinase, putative [Ricinus communis]
16 Hb_002401_010 0.3338191271 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
17 Hb_000347_380 0.3345939617 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
18 Hb_002025_240 0.335185984 - - -
19 Hb_000436_060 0.3356048689 - - hypothetical protein VITISV_016971 [Vitis vinifera]
20 Hb_002006_120 0.3358566955 - - PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_008890_030 Hb_008890_030 Hb_171900_030 Hb_171900_030 Hb_008890_030--Hb_171900_030 Hb_001629_010 Hb_001629_010 Hb_008890_030--Hb_001629_010 Hb_002076_030 Hb_002076_030 Hb_008890_030--Hb_002076_030 Hb_002498_150 Hb_002498_150 Hb_008890_030--Hb_002498_150 Hb_011232_010 Hb_011232_010 Hb_008890_030--Hb_011232_010 Hb_095449_010 Hb_095449_010 Hb_008890_030--Hb_095449_010 Hb_171900_030--Hb_002076_030 Hb_000879_240 Hb_000879_240 Hb_171900_030--Hb_000879_240 Hb_004108_120 Hb_004108_120 Hb_171900_030--Hb_004108_120 Hb_171900_030--Hb_011232_010 Hb_001771_060 Hb_001771_060 Hb_171900_030--Hb_001771_060 Hb_002552_020 Hb_002552_020 Hb_001629_010--Hb_002552_020 Hb_001629_010--Hb_171900_030 Hb_002010_050 Hb_002010_050 Hb_001629_010--Hb_002010_050 Hb_000340_250 Hb_000340_250 Hb_001629_010--Hb_000340_250 Hb_007044_100 Hb_007044_100 Hb_001629_010--Hb_007044_100 Hb_002076_030--Hb_001771_060 Hb_002076_030--Hb_004108_120 Hb_186312_010 Hb_186312_010 Hb_002076_030--Hb_186312_010 Hb_002999_140 Hb_002999_140 Hb_002076_030--Hb_002999_140 Hb_002006_120 Hb_002006_120 Hb_002076_030--Hb_002006_120 Hb_027337_050 Hb_027337_050 Hb_002498_150--Hb_027337_050 Hb_130579_050 Hb_130579_050 Hb_002498_150--Hb_130579_050 Hb_002025_240 Hb_002025_240 Hb_002498_150--Hb_002025_240 Hb_004191_030 Hb_004191_030 Hb_002498_150--Hb_004191_030 Hb_001899_040 Hb_001899_040 Hb_002498_150--Hb_001899_040 Hb_002571_050 Hb_002571_050 Hb_002498_150--Hb_002571_050 Hb_008078_020 Hb_008078_020 Hb_011232_010--Hb_008078_020 Hb_004570_040 Hb_004570_040 Hb_011232_010--Hb_004570_040 Hb_006873_030 Hb_006873_030 Hb_011232_010--Hb_006873_030 Hb_005545_080 Hb_005545_080 Hb_011232_010--Hb_005545_080 Hb_002097_120 Hb_002097_120 Hb_011232_010--Hb_002097_120 Hb_005474_050 Hb_005474_050 Hb_095449_010--Hb_005474_050 Hb_095449_010--Hb_002498_150 Hb_002092_140 Hb_002092_140 Hb_095449_010--Hb_002092_140 Hb_166828_010 Hb_166828_010 Hb_095449_010--Hb_166828_010 Hb_000320_170 Hb_000320_170 Hb_095449_010--Hb_000320_170 Hb_080873_010 Hb_080873_010 Hb_095449_010--Hb_080873_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.056106 0.0132715 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0202663 0 0.00401659 0.021662

CAGE analysis