Hb_002097_120

Information

Type transcription factor
Description TF Family: C2H2
Location Contig2097: 219032-219928
Sequence    

Annotation

kegg
ID rcu:RCOM_1353410
description nucleic acid binding protein, putative
nr
ID XP_002519455.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID Q681X4
description Zinc finger protein ZAT5 OS=Arabidopsis thaliana GN=ZAT5 PE=2 SV=1
trembl
ID B9S0D6
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1353410 PE=4 SV=1
Gene Ontology
ID GO:0005488
description zinc finger protein zat5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21690: 219508-219885
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002097_120 0.0 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
2 Hb_078901_010 0.1671832369 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
3 Hb_000116_350 0.1741040951 - - PREDICTED: uncharacterized protein LOC105628582 [Jatropha curcas]
4 Hb_000434_050 0.181314482 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
5 Hb_000307_110 0.1838116352 - - hypothetical protein JCGZ_08160 [Jatropha curcas]
6 Hb_090306_010 0.1896874508 - - hypothetical protein POPTR_0007s02300g [Populus trichocarpa]
7 Hb_000245_270 0.1931129356 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
8 Hb_185080_010 0.1947959674 - - -
9 Hb_001511_270 0.1964064975 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
10 Hb_009476_010 0.201046365 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
11 Hb_000805_150 0.2038400087 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
12 Hb_000988_020 0.2039264295 - - PREDICTED: transcription factor bHLH112 isoform X2 [Jatropha curcas]
13 Hb_003375_080 0.2071866954 - - PREDICTED: uncharacterized protein LOC105643382 isoform X1 [Jatropha curcas]
14 Hb_000061_100 0.2083010977 - - hypothetical protein CISIN_1g0053742mg, partial [Citrus sinensis]
15 Hb_008143_020 0.2108138604 - - PREDICTED: rhomboid-like protease 2 [Jatropha curcas]
16 Hb_005656_200 0.2146099301 - - Cation transport protein chaC, putative [Ricinus communis]
17 Hb_000181_080 0.2147478767 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
18 Hb_000856_410 0.2164418007 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_141990_050 0.2191605186 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
20 Hb_000172_080 0.2196609718 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]

Gene co-expression network

sample Hb_002097_120 Hb_002097_120 Hb_078901_010 Hb_078901_010 Hb_002097_120--Hb_078901_010 Hb_000116_350 Hb_000116_350 Hb_002097_120--Hb_000116_350 Hb_000434_050 Hb_000434_050 Hb_002097_120--Hb_000434_050 Hb_000307_110 Hb_000307_110 Hb_002097_120--Hb_000307_110 Hb_090306_010 Hb_090306_010 Hb_002097_120--Hb_090306_010 Hb_000245_270 Hb_000245_270 Hb_002097_120--Hb_000245_270 Hb_000805_150 Hb_000805_150 Hb_078901_010--Hb_000805_150 Hb_078901_010--Hb_000434_050 Hb_009476_010 Hb_009476_010 Hb_078901_010--Hb_009476_010 Hb_078901_010--Hb_000245_270 Hb_000172_080 Hb_000172_080 Hb_078901_010--Hb_000172_080 Hb_000373_250 Hb_000373_250 Hb_078901_010--Hb_000373_250 Hb_004945_050 Hb_004945_050 Hb_000116_350--Hb_004945_050 Hb_008550_030 Hb_008550_030 Hb_000116_350--Hb_008550_030 Hb_000060_100 Hb_000060_100 Hb_000116_350--Hb_000060_100 Hb_000061_100 Hb_000061_100 Hb_000116_350--Hb_000061_100 Hb_002341_040 Hb_002341_040 Hb_000116_350--Hb_002341_040 Hb_000116_350--Hb_090306_010 Hb_185080_010 Hb_185080_010 Hb_000434_050--Hb_185080_010 Hb_000015_180 Hb_000015_180 Hb_000434_050--Hb_000015_180 Hb_000434_050--Hb_000805_150 Hb_010589_130 Hb_010589_130 Hb_000434_050--Hb_010589_130 Hb_000220_090 Hb_000220_090 Hb_000434_050--Hb_000220_090 Hb_000181_080 Hb_000181_080 Hb_000307_110--Hb_000181_080 Hb_002284_020 Hb_002284_020 Hb_000307_110--Hb_002284_020 Hb_000297_100 Hb_000297_100 Hb_000307_110--Hb_000297_100 Hb_003086_050 Hb_003086_050 Hb_000307_110--Hb_003086_050 Hb_041290_030 Hb_041290_030 Hb_000307_110--Hb_041290_030 Hb_000103_400 Hb_000103_400 Hb_000307_110--Hb_000103_400 Hb_152414_010 Hb_152414_010 Hb_090306_010--Hb_152414_010 Hb_000032_230 Hb_000032_230 Hb_090306_010--Hb_000032_230 Hb_160576_010 Hb_160576_010 Hb_090306_010--Hb_160576_010 Hb_003929_040 Hb_003929_040 Hb_090306_010--Hb_003929_040 Hb_005656_200 Hb_005656_200 Hb_090306_010--Hb_005656_200 Hb_004879_030 Hb_004879_030 Hb_090306_010--Hb_004879_030 Hb_000506_130 Hb_000506_130 Hb_000245_270--Hb_000506_130 Hb_000245_270--Hb_000805_150 Hb_029238_020 Hb_029238_020 Hb_000245_270--Hb_029238_020 Hb_116349_090 Hb_116349_090 Hb_000245_270--Hb_116349_090 Hb_004143_050 Hb_004143_050 Hb_000245_270--Hb_004143_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.285046 8.40326 1.13849 1.5505 0 0.022351
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.581336 0.228584 0 0.0921884 1.39108

CAGE analysis