Hb_000116_350

Information

Type -
Description -
Location Contig116: 289816-291986
Sequence    

Annotation

kegg
ID rcu:RCOM_0875040
description auxin:hydrogen symporter, putative
nr
ID XP_012065419.1
description PREDICTED: uncharacterized protein LOC105628582 [Jatropha curcas]
swissprot
ID O14197
description Uncharacterized transporter C5D6.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC5D6.04 PE=3 SV=1
trembl
ID A0A067LGV7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22412 PE=4 SV=1
Gene Ontology
ID GO:0016021
description uncharacterized transporter ybr287w-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04874: 289623-289924 , PASA_asmbl_04875: 290153-290543 , PASA_asmbl_04876: 292022-298013
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_350 0.0 - - PREDICTED: uncharacterized protein LOC105628582 [Jatropha curcas]
2 Hb_004945_050 0.1406422841 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
3 Hb_008550_030 0.144251364 - - PREDICTED: tonoplast dicarboxylate transporter [Jatropha curcas]
4 Hb_000060_100 0.151656751 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
5 Hb_000061_100 0.1585872792 - - hypothetical protein CISIN_1g0053742mg, partial [Citrus sinensis]
6 Hb_002341_040 0.1650182313 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
7 Hb_090306_010 0.1721063573 - - hypothetical protein POPTR_0007s02300g [Populus trichocarpa]
8 Hb_000325_070 0.1722469411 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_001511_270 0.1722527632 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
10 Hb_002097_120 0.1741040951 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
11 Hb_013691_060 0.1746478262 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
12 Hb_001677_120 0.1767676586 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
13 Hb_026415_010 0.1773768068 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
14 Hb_152414_010 0.1779281498 desease resistance Gene Name: NB-ARC hypothetical protein PRUPE_ppa024232mg [Prunus persica]
15 Hb_005714_140 0.1788455882 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
16 Hb_002267_030 0.1805889975 - - hypothetical protein JCGZ_24883 [Jatropha curcas]
17 Hb_086002_010 0.1808487814 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
18 Hb_002097_210 0.1816684138 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004112_050 0.1826887393 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
20 Hb_160576_010 0.183316163 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000116_350 Hb_000116_350 Hb_004945_050 Hb_004945_050 Hb_000116_350--Hb_004945_050 Hb_008550_030 Hb_008550_030 Hb_000116_350--Hb_008550_030 Hb_000060_100 Hb_000060_100 Hb_000116_350--Hb_000060_100 Hb_000061_100 Hb_000061_100 Hb_000116_350--Hb_000061_100 Hb_002341_040 Hb_002341_040 Hb_000116_350--Hb_002341_040 Hb_090306_010 Hb_090306_010 Hb_000116_350--Hb_090306_010 Hb_004945_050--Hb_000060_100 Hb_001677_120 Hb_001677_120 Hb_004945_050--Hb_001677_120 Hb_004945_050--Hb_008550_030 Hb_004945_050--Hb_002341_040 Hb_000325_070 Hb_000325_070 Hb_004945_050--Hb_000325_070 Hb_000027_060 Hb_000027_060 Hb_004945_050--Hb_000027_060 Hb_002097_210 Hb_002097_210 Hb_008550_030--Hb_002097_210 Hb_002267_030 Hb_002267_030 Hb_008550_030--Hb_002267_030 Hb_008550_030--Hb_002341_040 Hb_030370_070 Hb_030370_070 Hb_008550_030--Hb_030370_070 Hb_008550_030--Hb_000060_100 Hb_160576_010 Hb_160576_010 Hb_000060_100--Hb_160576_010 Hb_001104_270 Hb_001104_270 Hb_000060_100--Hb_001104_270 Hb_002218_080 Hb_002218_080 Hb_000060_100--Hb_002218_080 Hb_002110_050 Hb_002110_050 Hb_000060_100--Hb_002110_050 Hb_001956_160 Hb_001956_160 Hb_000060_100--Hb_001956_160 Hb_004166_010 Hb_004166_010 Hb_000061_100--Hb_004166_010 Hb_000808_160 Hb_000808_160 Hb_000061_100--Hb_000808_160 Hb_002571_010 Hb_002571_010 Hb_000061_100--Hb_002571_010 Hb_000172_080 Hb_000172_080 Hb_000061_100--Hb_000172_080 Hb_000363_110 Hb_000363_110 Hb_000061_100--Hb_000363_110 Hb_000995_010 Hb_000995_010 Hb_000061_100--Hb_000995_010 Hb_002341_040--Hb_000060_100 Hb_002341_040--Hb_001677_120 Hb_001534_150 Hb_001534_150 Hb_002341_040--Hb_001534_150 Hb_002341_040--Hb_002097_210 Hb_152414_010 Hb_152414_010 Hb_090306_010--Hb_152414_010 Hb_000032_230 Hb_000032_230 Hb_090306_010--Hb_000032_230 Hb_090306_010--Hb_160576_010 Hb_003929_040 Hb_003929_040 Hb_090306_010--Hb_003929_040 Hb_005656_200 Hb_005656_200 Hb_090306_010--Hb_005656_200 Hb_004879_030 Hb_004879_030 Hb_090306_010--Hb_004879_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.14478 0.880693 1.62617 0.0314221 0.017393
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.306242 0 0 0.180785 1.18722

CAGE analysis