Hb_090306_010

Information

Type -
Description -
Location Contig90306: 1154-1942
Sequence    

Annotation

kegg
ID pop:POPTR_0007s02300g
description hypothetical protein
nr
ID XP_006380304.1
description hypothetical protein POPTR_0007s02300g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9P4W6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s02300g PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_090306_010 0.0 - - hypothetical protein POPTR_0007s02300g [Populus trichocarpa]
2 Hb_152414_010 0.1306252745 desease resistance Gene Name: NB-ARC hypothetical protein PRUPE_ppa024232mg [Prunus persica]
3 Hb_000032_230 0.136656726 transcription factor TF Family: ERF hypothetical protein JCGZ_20463 [Jatropha curcas]
4 Hb_160576_010 0.1409104127 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
5 Hb_003929_040 0.1415384031 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
6 Hb_005656_200 0.1451295392 - - Cation transport protein chaC, putative [Ricinus communis]
7 Hb_004879_030 0.1600369706 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
8 Hb_000156_080 0.1610892766 - - Potassium channel KAT2, putative [Ricinus communis]
9 Hb_000060_100 0.1620378534 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
10 Hb_002110_050 0.1670689158 - - conserved hypothetical protein [Ricinus communis]
11 Hb_097007_020 0.1685688065 - - PREDICTED: nudix hydrolase 12, mitochondrial-like [Populus euphratica]
12 Hb_004108_120 0.1694315728 - - PREDICTED: EID1-like F-box protein 3 [Jatropha curcas]
13 Hb_006873_030 0.1699814837 - - receptor serine/threonine kinase, putative [Ricinus communis]
14 Hb_000116_350 0.1721063573 - - PREDICTED: uncharacterized protein LOC105628582 [Jatropha curcas]
15 Hb_000780_110 0.1726910412 - - cation-transporting atpase plant, putative [Ricinus communis]
16 Hb_134022_010 0.1728777346 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
17 Hb_004109_150 0.1746997516 - - glutathione-S-transferase tau 1 [Hevea brasiliensis]
18 Hb_026415_010 0.1749571433 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
19 Hb_002783_130 0.175043931 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Jatropha curcas]
20 Hb_007441_150 0.179696473 - - Ankyrin repeat family protein [Theobroma cacao]

Gene co-expression network

sample Hb_090306_010 Hb_090306_010 Hb_152414_010 Hb_152414_010 Hb_090306_010--Hb_152414_010 Hb_000032_230 Hb_000032_230 Hb_090306_010--Hb_000032_230 Hb_160576_010 Hb_160576_010 Hb_090306_010--Hb_160576_010 Hb_003929_040 Hb_003929_040 Hb_090306_010--Hb_003929_040 Hb_005656_200 Hb_005656_200 Hb_090306_010--Hb_005656_200 Hb_004879_030 Hb_004879_030 Hb_090306_010--Hb_004879_030 Hb_152414_010--Hb_004879_030 Hb_006358_030 Hb_006358_030 Hb_152414_010--Hb_006358_030 Hb_115114_010 Hb_115114_010 Hb_152414_010--Hb_115114_010 Hb_036492_020 Hb_036492_020 Hb_152414_010--Hb_036492_020 Hb_026415_010 Hb_026415_010 Hb_152414_010--Hb_026415_010 Hb_152414_010--Hb_003929_040 Hb_000032_230--Hb_160576_010 Hb_000780_110 Hb_000780_110 Hb_000032_230--Hb_000780_110 Hb_002110_050 Hb_002110_050 Hb_000032_230--Hb_002110_050 Hb_001956_160 Hb_001956_160 Hb_000032_230--Hb_001956_160 Hb_004241_100 Hb_004241_100 Hb_000032_230--Hb_004241_100 Hb_002548_020 Hb_002548_020 Hb_000032_230--Hb_002548_020 Hb_000060_100 Hb_000060_100 Hb_160576_010--Hb_000060_100 Hb_160576_010--Hb_002110_050 Hb_002218_080 Hb_002218_080 Hb_160576_010--Hb_002218_080 Hb_160576_010--Hb_001956_160 Hb_160576_010--Hb_002548_020 Hb_000402_180 Hb_000402_180 Hb_003929_040--Hb_000402_180 Hb_003929_040--Hb_036492_020 Hb_003929_040--Hb_006358_030 Hb_003811_030 Hb_003811_030 Hb_003929_040--Hb_003811_030 Hb_070613_010 Hb_070613_010 Hb_003929_040--Hb_070613_010 Hb_134022_010 Hb_134022_010 Hb_003929_040--Hb_134022_010 Hb_000422_050 Hb_000422_050 Hb_005656_200--Hb_000422_050 Hb_009476_010 Hb_009476_010 Hb_005656_200--Hb_009476_010 Hb_007441_150 Hb_007441_150 Hb_005656_200--Hb_007441_150 Hb_005656_200--Hb_000032_230 Hb_001894_060 Hb_001894_060 Hb_005656_200--Hb_001894_060 Hb_032260_100 Hb_032260_100 Hb_005656_200--Hb_032260_100 Hb_004879_030--Hb_026415_010 Hb_004879_030--Hb_115114_010 Hb_000325_070 Hb_000325_070 Hb_004879_030--Hb_000325_070 Hb_009557_080 Hb_009557_080 Hb_004879_030--Hb_009557_080 Hb_004879_030--Hb_006358_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.27891 0.714929 0.612914 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0687405 0.0540495 0 0 0.650076

CAGE analysis