Hb_003929_040

Information

Type -
Description -
Location Contig3929: 28060-28968
Sequence    

Annotation

kegg
ID pop:POPTR_0017s06330g
description hypothetical protein
nr
ID XP_012066188.1
description PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
swissprot
ID Q9FID5
description Probable receptor-like protein kinase At5g39030 OS=Arabidopsis thaliana GN=At5g39030 PE=2 SV=1
trembl
ID A0A067LE94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23767 PE=3 SV=1
Gene Ontology
ID GO:0000166
description glycerophosphodiester phosphodiesterase protein kinase domain-containing gdpdl2-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003929_040 0.0 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
2 Hb_000402_180 0.0946581575 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
3 Hb_036492_020 0.0985467058 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
4 Hb_006358_030 0.1118408947 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
5 Hb_003811_030 0.113288766 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
6 Hb_070613_010 0.1177622419 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
7 Hb_134022_010 0.1186830027 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
8 Hb_152414_010 0.1196961328 desease resistance Gene Name: NB-ARC hypothetical protein PRUPE_ppa024232mg [Prunus persica]
9 Hb_004879_030 0.1350920586 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
10 Hb_006873_030 0.1391294321 - - receptor serine/threonine kinase, putative [Ricinus communis]
11 Hb_002030_100 0.1406502853 - - PREDICTED: putative clathrin assembly protein At4g40080 [Jatropha curcas]
12 Hb_000156_080 0.1411564874 - - Potassium channel KAT2, putative [Ricinus communis]
13 Hb_090306_010 0.1415384031 - - hypothetical protein POPTR_0007s02300g [Populus trichocarpa]
14 Hb_004109_150 0.1439742281 - - glutathione-S-transferase tau 1 [Hevea brasiliensis]
15 Hb_002110_050 0.1443632603 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002301_340 0.1461148716 transcription factor TF Family: B3 leafy cotyledon 2 [Ricinus communis]
17 Hb_006907_020 0.1472137831 - - 1-amino-cyclopropane-1-carboxylic acid oxidase 3 [Manihot esculenta]
18 Hb_000032_230 0.1478141911 transcription factor TF Family: ERF hypothetical protein JCGZ_20463 [Jatropha curcas]
19 Hb_160576_010 0.1521424572 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
20 Hb_005772_020 0.154134778 - - hypothetical protein B456_002G103400 [Gossypium raimondii]

Gene co-expression network

sample Hb_003929_040 Hb_003929_040 Hb_000402_180 Hb_000402_180 Hb_003929_040--Hb_000402_180 Hb_036492_020 Hb_036492_020 Hb_003929_040--Hb_036492_020 Hb_006358_030 Hb_006358_030 Hb_003929_040--Hb_006358_030 Hb_003811_030 Hb_003811_030 Hb_003929_040--Hb_003811_030 Hb_070613_010 Hb_070613_010 Hb_003929_040--Hb_070613_010 Hb_134022_010 Hb_134022_010 Hb_003929_040--Hb_134022_010 Hb_000402_180--Hb_036492_020 Hb_000402_180--Hb_134022_010 Hb_000402_180--Hb_070613_010 Hb_001660_130 Hb_001660_130 Hb_000402_180--Hb_001660_130 Hb_008810_030 Hb_008810_030 Hb_000402_180--Hb_008810_030 Hb_036492_020--Hb_006358_030 Hb_000656_260 Hb_000656_260 Hb_036492_020--Hb_000656_260 Hb_036492_020--Hb_134022_010 Hb_152414_010 Hb_152414_010 Hb_036492_020--Hb_152414_010 Hb_000032_590 Hb_000032_590 Hb_006358_030--Hb_000032_590 Hb_002030_100 Hb_002030_100 Hb_006358_030--Hb_002030_100 Hb_006358_030--Hb_152414_010 Hb_005772_020 Hb_005772_020 Hb_006358_030--Hb_005772_020 Hb_004879_030 Hb_004879_030 Hb_006358_030--Hb_004879_030 Hb_006873_030 Hb_006873_030 Hb_003811_030--Hb_006873_030 Hb_019026_040 Hb_019026_040 Hb_003811_030--Hb_019026_040 Hb_107552_020 Hb_107552_020 Hb_003811_030--Hb_107552_020 Hb_003811_030--Hb_036492_020 Hb_010175_050 Hb_010175_050 Hb_003811_030--Hb_010175_050 Hb_002301_340 Hb_002301_340 Hb_070613_010--Hb_002301_340 Hb_002548_020 Hb_002548_020 Hb_070613_010--Hb_002548_020 Hb_070613_010--Hb_134022_010 Hb_002783_130 Hb_002783_130 Hb_070613_010--Hb_002783_130 Hb_002110_050 Hb_002110_050 Hb_070613_010--Hb_002110_050 Hb_004724_300 Hb_004724_300 Hb_134022_010--Hb_004724_300 Hb_134022_010--Hb_008810_030 Hb_001821_050 Hb_001821_050 Hb_134022_010--Hb_001821_050 Hb_004393_030 Hb_004393_030 Hb_134022_010--Hb_004393_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.78647 1.32351 0.659689 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.976305

CAGE analysis