Hb_000363_110

Information

Type transcription factor
Description TF Family: GRAS
Location Contig363: 80199-81788
Sequence    

Annotation

kegg
ID rcu:RCOM_0047210
description Chitin-inducible gibberellin-responsive protein, putative
nr
ID XP_012070969.1
description PREDICTED: scarecrow-like protein 21 [Jatropha curcas]
swissprot
ID Q8H125
description Scarecrow-like protein 5 OS=Arabidopsis thaliana GN=SCL5 PE=2 SV=1
trembl
ID A0A067L5A1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00996 PE=4 SV=1
Gene Ontology
ID GO:0005829
description scarecrow-like transcription factor pat1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37271: 78035-82146 , PASA_asmbl_37272: 79259-79564 , PASA_asmbl_37275: 79585-79960
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000363_110 0.0 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 21 [Jatropha curcas]
2 Hb_000397_090 0.0848414213 - - PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]
3 Hb_001345_030 0.098281347 - - hypothetical protein POPTR_0007s10390g, partial [Populus trichocarpa]
4 Hb_002234_200 0.1066790211 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
5 Hb_013607_010 0.1075658533 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
6 Hb_098160_010 0.1152820689 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
7 Hb_000003_420 0.1184282843 - - o-methyltransferase, putative [Ricinus communis]
8 Hb_000359_080 0.1268135669 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
9 Hb_000172_080 0.1283675831 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
10 Hb_000473_080 0.1287543277 - - PREDICTED: lipase-like PAD4 [Populus euphratica]
11 Hb_006698_020 0.1340653922 - - hypothetical protein JCGZ_04585 [Jatropha curcas]
12 Hb_077995_010 0.1344866235 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
13 Hb_009510_050 0.1365998285 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001898_010 0.1368838396 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
15 Hb_073119_010 0.1379831003 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
16 Hb_000061_100 0.1410670453 - - hypothetical protein CISIN_1g0053742mg, partial [Citrus sinensis]
17 Hb_000000_070 0.1414823816 - - allene oxide synthase [Hevea brasiliensis]
18 Hb_000522_130 0.1421446206 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
19 Hb_078901_010 0.144807271 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
20 Hb_007574_050 0.1448317663 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]

Gene co-expression network

sample Hb_000363_110 Hb_000363_110 Hb_000397_090 Hb_000397_090 Hb_000363_110--Hb_000397_090 Hb_001345_030 Hb_001345_030 Hb_000363_110--Hb_001345_030 Hb_002234_200 Hb_002234_200 Hb_000363_110--Hb_002234_200 Hb_013607_010 Hb_013607_010 Hb_000363_110--Hb_013607_010 Hb_098160_010 Hb_098160_010 Hb_000363_110--Hb_098160_010 Hb_000003_420 Hb_000003_420 Hb_000363_110--Hb_000003_420 Hb_000397_090--Hb_001345_030 Hb_000397_090--Hb_000003_420 Hb_006911_060 Hb_006911_060 Hb_000397_090--Hb_006911_060 Hb_006698_020 Hb_006698_020 Hb_000397_090--Hb_006698_020 Hb_000359_080 Hb_000359_080 Hb_000397_090--Hb_000359_080 Hb_077995_010 Hb_077995_010 Hb_001345_030--Hb_077995_010 Hb_000172_080 Hb_000172_080 Hb_001345_030--Hb_000172_080 Hb_004166_010 Hb_004166_010 Hb_001345_030--Hb_004166_010 Hb_001345_030--Hb_000359_080 Hb_001405_060 Hb_001405_060 Hb_002234_200--Hb_001405_060 Hb_005282_010 Hb_005282_010 Hb_002234_200--Hb_005282_010 Hb_002234_200--Hb_013607_010 Hb_008948_110 Hb_008948_110 Hb_002234_200--Hb_008948_110 Hb_002234_200--Hb_098160_010 Hb_127400_010 Hb_127400_010 Hb_013607_010--Hb_127400_010 Hb_001568_120 Hb_001568_120 Hb_013607_010--Hb_001568_120 Hb_029238_020 Hb_029238_020 Hb_013607_010--Hb_029238_020 Hb_009510_050 Hb_009510_050 Hb_013607_010--Hb_009510_050 Hb_098160_010--Hb_001405_060 Hb_007574_050 Hb_007574_050 Hb_098160_010--Hb_007574_050 Hb_098160_010--Hb_005282_010 Hb_001898_010 Hb_001898_010 Hb_098160_010--Hb_001898_010 Hb_000473_080 Hb_000473_080 Hb_000003_420--Hb_000473_080 Hb_029866_050 Hb_029866_050 Hb_000003_420--Hb_029866_050 Hb_073119_010 Hb_073119_010 Hb_000003_420--Hb_073119_010 Hb_000003_420--Hb_006698_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.51312 294.402 75.2058 71.3989 2.86138 10.7412
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.48296 1.6547 0.389444 39.0489 29.6385

CAGE analysis