Hb_001345_030

Information

Type -
Description -
Location Contig1345: 57339-58536
Sequence    

Annotation

kegg
ID pop:POPTR_0007s10390g
description hypothetical protein
nr
ID XP_006380679.1
description hypothetical protein POPTR_0007s10390g, partial [Populus trichocarpa]
swissprot
ID C7J3A2
description Ent-kaurene oxidase-like protein 1 OS=Oryza sativa subsp. japonica GN=CYP701A7 PE=5 SV=1
trembl
ID U5G873
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0007s10390g PE=4 SV=1
Gene Ontology
ID GO:0005506
description cytochrome p450 81e8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09762: 57463-58646
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001345_030 0.0 - - hypothetical protein POPTR_0007s10390g, partial [Populus trichocarpa]
2 Hb_000397_090 0.0970723259 - - PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]
3 Hb_000363_110 0.098281347 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 21 [Jatropha curcas]
4 Hb_077995_010 0.1009021917 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
5 Hb_000172_080 0.1246679387 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
6 Hb_004166_010 0.1339360587 - - PREDICTED: uncharacterized protein LOC105638508 [Jatropha curcas]
7 Hb_000359_080 0.1350907093 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
8 Hb_015882_020 0.1371384612 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
9 Hb_001504_270 0.1393697689 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
10 Hb_008253_040 0.1429937292 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
11 Hb_004030_070 0.1434081772 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
12 Hb_078901_010 0.1437646979 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
13 Hb_010589_130 0.1447205249 - - PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]
14 Hb_000465_100 0.1471638783 - - catalytic, putative [Ricinus communis]
15 Hb_000705_130 0.1486742628 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006414_020 0.1497577921 transcription factor TF Family: MYB -
17 Hb_002234_200 0.1508592868 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
18 Hb_000522_130 0.1515006772 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
19 Hb_008103_100 0.1520427986 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2 [Jatropha curcas]
20 Hb_000473_080 0.1564831744 - - PREDICTED: lipase-like PAD4 [Populus euphratica]

Gene co-expression network

sample Hb_001345_030 Hb_001345_030 Hb_000397_090 Hb_000397_090 Hb_001345_030--Hb_000397_090 Hb_000363_110 Hb_000363_110 Hb_001345_030--Hb_000363_110 Hb_077995_010 Hb_077995_010 Hb_001345_030--Hb_077995_010 Hb_000172_080 Hb_000172_080 Hb_001345_030--Hb_000172_080 Hb_004166_010 Hb_004166_010 Hb_001345_030--Hb_004166_010 Hb_000359_080 Hb_000359_080 Hb_001345_030--Hb_000359_080 Hb_000397_090--Hb_000363_110 Hb_000003_420 Hb_000003_420 Hb_000397_090--Hb_000003_420 Hb_006911_060 Hb_006911_060 Hb_000397_090--Hb_006911_060 Hb_006698_020 Hb_006698_020 Hb_000397_090--Hb_006698_020 Hb_000397_090--Hb_000359_080 Hb_002234_200 Hb_002234_200 Hb_000363_110--Hb_002234_200 Hb_013607_010 Hb_013607_010 Hb_000363_110--Hb_013607_010 Hb_098160_010 Hb_098160_010 Hb_000363_110--Hb_098160_010 Hb_000363_110--Hb_000003_420 Hb_000465_100 Hb_000465_100 Hb_077995_010--Hb_000465_100 Hb_077995_010--Hb_000397_090 Hb_077995_010--Hb_000363_110 Hb_000247_150 Hb_000247_150 Hb_077995_010--Hb_000247_150 Hb_013720_010 Hb_013720_010 Hb_077995_010--Hb_013720_010 Hb_000172_080--Hb_000359_080 Hb_000172_080--Hb_004166_010 Hb_078901_010 Hb_078901_010 Hb_000172_080--Hb_078901_010 Hb_008253_040 Hb_008253_040 Hb_000172_080--Hb_008253_040 Hb_000172_080--Hb_098160_010 Hb_001863_450 Hb_001863_450 Hb_004166_010--Hb_001863_450 Hb_000061_100 Hb_000061_100 Hb_004166_010--Hb_000061_100 Hb_004166_010--Hb_008253_040 Hb_004466_070 Hb_004466_070 Hb_004166_010--Hb_004466_070 Hb_002571_010 Hb_002571_010 Hb_004166_010--Hb_002571_010 Hb_000473_080 Hb_000473_080 Hb_000359_080--Hb_000473_080 Hb_029866_050 Hb_029866_050 Hb_000359_080--Hb_029866_050 Hb_000359_080--Hb_000003_420 Hb_000103_400 Hb_000103_400 Hb_000359_080--Hb_000103_400 Hb_000359_080--Hb_000363_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.137388 9.32783 2.23606 1.54726 0.301361 0.426568
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0483862 0.0761137 0.0702168 1.02449 1.40505

CAGE analysis