Hb_000359_080

Information

Type -
Description -
Location Contig359: 113489-115186
Sequence    

Annotation

kegg
ID rcu:RCOM_1192560
description basic 7S globulin 2 precursor small subunit, putative
nr
ID XP_002520371.1
description basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
swissprot
ID Q766C2
description Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1
trembl
ID B9S302
description Basic 7S globulin 2 small subunit, putative OS=Ricinus communis GN=RCOM_1192560 PE=3 SV=1
Gene Ontology
ID GO:0004190
description aspartic proteinase nepenthesin-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37038: 113349-114792
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000359_080 0.0 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
2 Hb_000172_080 0.1016928606 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
3 Hb_000473_080 0.1023657915 - - PREDICTED: lipase-like PAD4 [Populus euphratica]
4 Hb_029866_050 0.1197348181 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF4 [Jatropha curcas]
5 Hb_000003_420 0.119940428 - - o-methyltransferase, putative [Ricinus communis]
6 Hb_000103_400 0.1228004351 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
7 Hb_000363_110 0.1268135669 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 21 [Jatropha curcas]
8 Hb_000397_090 0.1288568221 - - PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]
9 Hb_003914_050 0.1292949544 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
10 Hb_009476_010 0.1309705718 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
11 Hb_009476_110 0.1331387747 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
12 Hb_078901_010 0.133817273 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
13 Hb_001345_030 0.1350907093 - - hypothetical protein POPTR_0007s10390g, partial [Populus trichocarpa]
14 Hb_000181_080 0.13526411 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
15 Hb_002234_200 0.1375423962 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
16 Hb_073119_010 0.1405052408 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
17 Hb_002284_020 0.1416032652 - - PREDICTED: probable inorganic phosphate transporter 1-9 [Jatropha curcas]
18 Hb_000522_130 0.1450189266 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
19 Hb_000245_270 0.1454376666 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
20 Hb_000307_110 0.146369546 - - hypothetical protein JCGZ_08160 [Jatropha curcas]

Gene co-expression network

sample Hb_000359_080 Hb_000359_080 Hb_000172_080 Hb_000172_080 Hb_000359_080--Hb_000172_080 Hb_000473_080 Hb_000473_080 Hb_000359_080--Hb_000473_080 Hb_029866_050 Hb_029866_050 Hb_000359_080--Hb_029866_050 Hb_000003_420 Hb_000003_420 Hb_000359_080--Hb_000003_420 Hb_000103_400 Hb_000103_400 Hb_000359_080--Hb_000103_400 Hb_000363_110 Hb_000363_110 Hb_000359_080--Hb_000363_110 Hb_004166_010 Hb_004166_010 Hb_000172_080--Hb_004166_010 Hb_078901_010 Hb_078901_010 Hb_000172_080--Hb_078901_010 Hb_008253_040 Hb_008253_040 Hb_000172_080--Hb_008253_040 Hb_001345_030 Hb_001345_030 Hb_000172_080--Hb_001345_030 Hb_098160_010 Hb_098160_010 Hb_000172_080--Hb_098160_010 Hb_000473_080--Hb_000003_420 Hb_000752_020 Hb_000752_020 Hb_000473_080--Hb_000752_020 Hb_073119_010 Hb_073119_010 Hb_000473_080--Hb_073119_010 Hb_000473_080--Hb_000103_400 Hb_002272_140 Hb_002272_140 Hb_000473_080--Hb_002272_140 Hb_006698_020 Hb_006698_020 Hb_029866_050--Hb_006698_020 Hb_000649_160 Hb_000649_160 Hb_029866_050--Hb_000649_160 Hb_029866_050--Hb_000003_420 Hb_001568_120 Hb_001568_120 Hb_029866_050--Hb_001568_120 Hb_029866_050--Hb_000473_080 Hb_000397_090 Hb_000397_090 Hb_000003_420--Hb_000397_090 Hb_000003_420--Hb_073119_010 Hb_000003_420--Hb_006698_020 Hb_000003_420--Hb_000363_110 Hb_000103_400--Hb_002272_140 Hb_000181_080 Hb_000181_080 Hb_000103_400--Hb_000181_080 Hb_006414_020 Hb_006414_020 Hb_000103_400--Hb_006414_020 Hb_000803_060 Hb_000803_060 Hb_000103_400--Hb_000803_060 Hb_000363_110--Hb_000397_090 Hb_000363_110--Hb_001345_030 Hb_002234_200 Hb_002234_200 Hb_000363_110--Hb_002234_200 Hb_013607_010 Hb_013607_010 Hb_000363_110--Hb_013607_010 Hb_000363_110--Hb_098160_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.151602 20.9406 4.84945 4.61267 0.070823 0.218582
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.433749 0.362592 0.643994 2.48209 2.91436

CAGE analysis