Hb_008253_040

Information

Type -
Description -
Location Contig8253: 48153-50470
Sequence    

Annotation

kegg
ID rcu:RCOM_0530710
description ubiquitin-protein ligase, putative
nr
ID XP_012071253.1
description PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
swissprot
ID B9SLR1
description UPF0392 protein RCOM_0530710 OS=Ricinus communis GN=RCOM_0530710 PE=3 SV=1
trembl
ID A0A067LD83
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10187 PE=4 SV=1
Gene Ontology
ID GO:0016021
description upf0392 protein rcom_0530710-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59714: 49280-50434
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008253_040 0.0 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
2 Hb_000856_410 0.1066322401 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_004166_010 0.1182802935 - - PREDICTED: uncharacterized protein LOC105638508 [Jatropha curcas]
4 Hb_000172_080 0.1218217007 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
5 Hb_004030_070 0.1316328468 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
6 Hb_001863_450 0.1378336946 - - cryptochrome 1.2 [Populus tremula]
7 Hb_001345_030 0.1429937292 - - hypothetical protein POPTR_0007s10390g, partial [Populus trichocarpa]
8 Hb_000333_120 0.1432069363 - - PREDICTED: thiol protease aleurain-like [Jatropha curcas]
9 Hb_002571_010 0.145581647 - - cationic amino acid transporter, putative [Ricinus communis]
10 Hb_000061_100 0.152475766 - - hypothetical protein CISIN_1g0053742mg, partial [Citrus sinensis]
11 Hb_001504_270 0.1571627258 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
12 Hb_000359_080 0.161220566 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
13 Hb_015882_020 0.1628903026 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
14 Hb_027402_100 0.1681605998 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
15 Hb_005048_080 0.1727812473 - - PREDICTED: PAP-specific phosphatase HAL2-like [Jatropha curcas]
16 Hb_001534_150 0.1731053579 - - PREDICTED: uncharacterized permease C29B12.14c [Jatropha curcas]
17 Hb_002341_040 0.1746267786 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
18 Hb_006618_020 0.1750660758 - - Vacuolar-processing enzyme precursor [Ricinus communis]
19 Hb_000522_130 0.1766544851 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
20 Hb_000307_110 0.1767754826 - - hypothetical protein JCGZ_08160 [Jatropha curcas]

Gene co-expression network

sample Hb_008253_040 Hb_008253_040 Hb_000856_410 Hb_000856_410 Hb_008253_040--Hb_000856_410 Hb_004166_010 Hb_004166_010 Hb_008253_040--Hb_004166_010 Hb_000172_080 Hb_000172_080 Hb_008253_040--Hb_000172_080 Hb_004030_070 Hb_004030_070 Hb_008253_040--Hb_004030_070 Hb_001863_450 Hb_001863_450 Hb_008253_040--Hb_001863_450 Hb_001345_030 Hb_001345_030 Hb_008253_040--Hb_001345_030 Hb_000856_410--Hb_000172_080 Hb_000856_410--Hb_004030_070 Hb_072276_010 Hb_072276_010 Hb_000856_410--Hb_072276_010 Hb_078901_010 Hb_078901_010 Hb_000856_410--Hb_078901_010 Hb_000856_410--Hb_004166_010 Hb_004166_010--Hb_001863_450 Hb_004166_010--Hb_000172_080 Hb_000061_100 Hb_000061_100 Hb_004166_010--Hb_000061_100 Hb_004466_070 Hb_004466_070 Hb_004166_010--Hb_004466_070 Hb_002571_010 Hb_002571_010 Hb_004166_010--Hb_002571_010 Hb_000359_080 Hb_000359_080 Hb_000172_080--Hb_000359_080 Hb_000172_080--Hb_078901_010 Hb_000172_080--Hb_001345_030 Hb_098160_010 Hb_098160_010 Hb_000172_080--Hb_098160_010 Hb_015882_020 Hb_015882_020 Hb_004030_070--Hb_015882_020 Hb_000333_120 Hb_000333_120 Hb_004030_070--Hb_000333_120 Hb_004030_070--Hb_001345_030 Hb_004030_070--Hb_004166_010 Hb_001504_270 Hb_001504_270 Hb_004030_070--Hb_001504_270 Hb_001863_450--Hb_004466_070 Hb_003371_140 Hb_003371_140 Hb_001863_450--Hb_003371_140 Hb_033642_070 Hb_033642_070 Hb_001863_450--Hb_033642_070 Hb_001863_450--Hb_000172_080 Hb_000397_090 Hb_000397_090 Hb_001345_030--Hb_000397_090 Hb_000363_110 Hb_000363_110 Hb_001345_030--Hb_000363_110 Hb_077995_010 Hb_077995_010 Hb_001345_030--Hb_077995_010 Hb_001345_030--Hb_004166_010 Hb_001345_030--Hb_000359_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.79013 107.193 13.9229 17.4342 0.796922 4.65868
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.21013 1.44527 1.90433 10.265 29.9308

CAGE analysis