Hb_072276_010

Information

Type -
Description -
Location Contig72276: 1324-2220
Sequence    

Annotation

kegg
ID pop:POPTR_0007s12290g
description POPTRDRAFT_764671; hypothetical protein
nr
ID XP_012079094.1
description PREDICTED: elongation of fatty acids protein 3-like [Jatropha curcas]
swissprot
ID Q9SYY4
description Elongation of fatty acids protein 3-like OS=Arabidopsis thaliana GN=HOS3 PE=2 SV=1
trembl
ID A0A067K6T6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12273 PE=4 SV=1
Gene Ontology
ID GO:0016021
description elongation of fatty acids protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55733: 1140-2343
cDNA
(Sanger)
(ID:Location)		 021_M03.ab1: 1319-1539 , 024_I18.ab1: 1319-1539

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_072276_010 0.0 - - PREDICTED: elongation of fatty acids protein 3-like [Jatropha curcas]
2 Hb_001863_450 0.1481140622 - - cryptochrome 1.2 [Populus tremula]
3 Hb_001230_020 0.1519399453 - - hypothetical protein POPTR_0001s31610g [Populus trichocarpa]
4 Hb_012812_010 0.1578544492 - - putative leucine-rich repeat receptor-like serine/threonine-protein kinase [Morus notabilis]
5 Hb_000221_060 0.1648709176 - - -
6 Hb_007850_010 0.1655890296 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.4 [Jatropha curcas]
7 Hb_004166_010 0.1689485343 - - PREDICTED: uncharacterized protein LOC105638508 [Jatropha curcas]
8 Hb_000856_410 0.1699716207 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_004994_300 0.1704768556 - - synaptotagmin, putative [Ricinus communis]
10 Hb_001489_120 0.1739588493 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
11 Hb_002400_160 0.1811652933 - - Ubiquitin-protein ligase BRE1A, putative [Ricinus communis]
12 Hb_008253_040 0.1816902863 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
13 Hb_126103_010 0.1853449728 - - Phosphoprotein phosphatase [Theobroma cacao]
14 Hb_007313_070 0.1868498513 - - PREDICTED: gibberellin receptor GID1C [Jatropha curcas]
15 Hb_033642_070 0.1883521323 - - PREDICTED: oligopeptide transporter 7-like [Jatropha curcas]
16 Hb_002793_060 0.1907119291 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980 [Populus euphratica]
17 Hb_001662_170 0.1930278097 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
18 Hb_000179_230 0.1936896595 - - PREDICTED: myosin-17 [Jatropha curcas]
19 Hb_027402_100 0.1939185044 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
20 Hb_048755_020 0.1947204507 - - hypothetical protein JCGZ_09860 [Jatropha curcas]

Gene co-expression network

sample Hb_072276_010 Hb_072276_010 Hb_001863_450 Hb_001863_450 Hb_072276_010--Hb_001863_450 Hb_001230_020 Hb_001230_020 Hb_072276_010--Hb_001230_020 Hb_012812_010 Hb_012812_010 Hb_072276_010--Hb_012812_010 Hb_000221_060 Hb_000221_060 Hb_072276_010--Hb_000221_060 Hb_007850_010 Hb_007850_010 Hb_072276_010--Hb_007850_010 Hb_004166_010 Hb_004166_010 Hb_072276_010--Hb_004166_010 Hb_001863_450--Hb_004166_010 Hb_004466_070 Hb_004466_070 Hb_001863_450--Hb_004466_070 Hb_003371_140 Hb_003371_140 Hb_001863_450--Hb_003371_140 Hb_033642_070 Hb_033642_070 Hb_001863_450--Hb_033642_070 Hb_008253_040 Hb_008253_040 Hb_001863_450--Hb_008253_040 Hb_000172_080 Hb_000172_080 Hb_001863_450--Hb_000172_080 Hb_001230_020--Hb_012812_010 Hb_000126_040 Hb_000126_040 Hb_001230_020--Hb_000126_040 Hb_126103_010 Hb_126103_010 Hb_001230_020--Hb_126103_010 Hb_000032_020 Hb_000032_020 Hb_001230_020--Hb_000032_020 Hb_001195_730 Hb_001195_730 Hb_001230_020--Hb_001195_730 Hb_001230_030 Hb_001230_030 Hb_012812_010--Hb_001230_030 Hb_002400_160 Hb_002400_160 Hb_012812_010--Hb_002400_160 Hb_019863_060 Hb_019863_060 Hb_012812_010--Hb_019863_060 Hb_002154_020 Hb_002154_020 Hb_012812_010--Hb_002154_020 Hb_000120_160 Hb_000120_160 Hb_012812_010--Hb_000120_160 Hb_000803_060 Hb_000803_060 Hb_000221_060--Hb_000803_060 Hb_001489_120 Hb_001489_120 Hb_000221_060--Hb_001489_120 Hb_012787_040 Hb_012787_040 Hb_000221_060--Hb_012787_040 Hb_000071_140 Hb_000071_140 Hb_000221_060--Hb_000071_140 Hb_006414_020 Hb_006414_020 Hb_000221_060--Hb_006414_020 Hb_000103_400 Hb_000103_400 Hb_000221_060--Hb_000103_400 Hb_000473_150 Hb_000473_150 Hb_007850_010--Hb_000473_150 Hb_007850_010--Hb_019863_060 Hb_001404_090 Hb_001404_090 Hb_007850_010--Hb_001404_090 Hb_001242_190 Hb_001242_190 Hb_007850_010--Hb_001242_190 Hb_004013_020 Hb_004013_020 Hb_007850_010--Hb_004013_020 Hb_000175_270 Hb_000175_270 Hb_007850_010--Hb_000175_270 Hb_004166_010--Hb_000172_080 Hb_000061_100 Hb_000061_100 Hb_004166_010--Hb_000061_100 Hb_004166_010--Hb_008253_040 Hb_004166_010--Hb_004466_070 Hb_002571_010 Hb_002571_010 Hb_004166_010--Hb_002571_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.5654 194.899 22.9804 29.7281 11.4568 9.95153
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.463 7.49755 10.0197 19.8205 67.9774

CAGE analysis