Hb_001195_730

Information

Type -
Description -
Location Contig1195: 519785-521728
Sequence    

Annotation

kegg
ID rcu:RCOM_1593420
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_012071767.1
description PREDICTED: protein LYK5-like [Jatropha curcas]
swissprot
ID O22808
description Protein LYK5 OS=Arabidopsis thaliana GN=LYK5 PE=2 SV=1
trembl
ID A0A067KQG2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04381 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_730 0.0 - - PREDICTED: protein LYK5-like [Jatropha curcas]
2 Hb_006501_170 0.1591323044 - - hypothetical protein JCGZ_07371 [Jatropha curcas]
3 Hb_000126_040 0.1652848227 - - kinase, putative [Ricinus communis]
4 Hb_011716_050 0.1670646447 - - serine acetyltransferase [Hevea brasiliensis]
5 Hb_001230_020 0.1719642282 - - hypothetical protein POPTR_0001s31610g [Populus trichocarpa]
6 Hb_012812_010 0.175038399 - - putative leucine-rich repeat receptor-like serine/threonine-protein kinase [Morus notabilis]
7 Hb_001230_030 0.1772413924 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650 isoform X2 [Populus euphratica]
8 Hb_001242_190 0.1815655844 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
9 Hb_003371_140 0.1825048207 - - hypothetical protein POPTR_0001s23540g, partial [Populus trichocarpa]
10 Hb_000120_160 0.1901692551 - - unnamed protein product [Vitis vinifera]
11 Hb_001863_450 0.1919380704 - - cryptochrome 1.2 [Populus tremula]
12 Hb_000221_060 0.1931064653 - - -
13 Hb_114684_010 0.1934846891 - - PREDICTED: seed maturation protein PM36 [Jatropha curcas]
14 Hb_000107_440 0.1947518504 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis]
15 Hb_001049_160 0.195304841 - - aldose 1-epimerase, putative [Ricinus communis]
16 Hb_000809_080 0.1976141372 - - 50S ribosomal protein L25, putative [Ricinus communis]
17 Hb_003185_100 0.1981738584 - - hypothetical protein JCGZ_07188 [Jatropha curcas]
18 Hb_001754_200 0.2015480293 - - PREDICTED: U1 small nuclear ribonucleoprotein C [Jatropha curcas]
19 Hb_006935_010 0.2029954082 - - PREDICTED: inositol transporter 1 isoform X1 [Gossypium raimondii]
20 Hb_004166_010 0.2045258638 - - PREDICTED: uncharacterized protein LOC105638508 [Jatropha curcas]

Gene co-expression network

sample Hb_001195_730 Hb_001195_730 Hb_006501_170 Hb_006501_170 Hb_001195_730--Hb_006501_170 Hb_000126_040 Hb_000126_040 Hb_001195_730--Hb_000126_040 Hb_011716_050 Hb_011716_050 Hb_001195_730--Hb_011716_050 Hb_001230_020 Hb_001230_020 Hb_001195_730--Hb_001230_020 Hb_012812_010 Hb_012812_010 Hb_001195_730--Hb_012812_010 Hb_001230_030 Hb_001230_030 Hb_001195_730--Hb_001230_030 Hb_002518_270 Hb_002518_270 Hb_006501_170--Hb_002518_270 Hb_003106_210 Hb_003106_210 Hb_006501_170--Hb_003106_210 Hb_004218_160 Hb_004218_160 Hb_006501_170--Hb_004218_160 Hb_008948_080 Hb_008948_080 Hb_006501_170--Hb_008948_080 Hb_003371_140 Hb_003371_140 Hb_006501_170--Hb_003371_140 Hb_011214_140 Hb_011214_140 Hb_006501_170--Hb_011214_140 Hb_000126_040--Hb_001230_020 Hb_001863_450 Hb_001863_450 Hb_000126_040--Hb_001863_450 Hb_004166_010 Hb_004166_010 Hb_000126_040--Hb_004166_010 Hb_000815_150 Hb_000815_150 Hb_000126_040--Hb_000815_150 Hb_000221_060 Hb_000221_060 Hb_000126_040--Hb_000221_060 Hb_000107_440 Hb_000107_440 Hb_011716_050--Hb_000107_440 Hb_029622_020 Hb_029622_020 Hb_011716_050--Hb_029622_020 Hb_006846_020 Hb_006846_020 Hb_011716_050--Hb_006846_020 Hb_000038_040 Hb_000038_040 Hb_011716_050--Hb_000038_040 Hb_006935_010 Hb_006935_010 Hb_011716_050--Hb_006935_010 Hb_001959_120 Hb_001959_120 Hb_011716_050--Hb_001959_120 Hb_001230_020--Hb_012812_010 Hb_072276_010 Hb_072276_010 Hb_001230_020--Hb_072276_010 Hb_126103_010 Hb_126103_010 Hb_001230_020--Hb_126103_010 Hb_000032_020 Hb_000032_020 Hb_001230_020--Hb_000032_020 Hb_012812_010--Hb_001230_030 Hb_002400_160 Hb_002400_160 Hb_012812_010--Hb_002400_160 Hb_019863_060 Hb_019863_060 Hb_012812_010--Hb_019863_060 Hb_002154_020 Hb_002154_020 Hb_012812_010--Hb_002154_020 Hb_000120_160 Hb_000120_160 Hb_012812_010--Hb_000120_160 Hb_000340_290 Hb_000340_290 Hb_001230_030--Hb_000340_290 Hb_001230_030--Hb_002400_160 Hb_000684_050 Hb_000684_050 Hb_001230_030--Hb_000684_050 Hb_001488_040 Hb_001488_040 Hb_001230_030--Hb_001488_040 Hb_000331_510 Hb_000331_510 Hb_001230_030--Hb_000331_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.435156 0.0781083 0.0676083 0.0205228 0.00988812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0465836 0.036653 0.0347257 0.145862 0.116093

CAGE analysis