Hb_001230_020

Information

Type -
Description -
Location Contig1230: 28431-34809
Sequence    

Annotation

kegg
ID pop:POPTR_0001s31610g
description POPTRDRAFT_844714; hypothetical protein
nr
ID XP_002300205.2
description hypothetical protein POPTR_0001s31610g [Populus trichocarpa]
swissprot
ID C0LGE0
description Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1
trembl
ID B9GGS8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s31610g PE=4 SV=2
Gene Ontology
ID GO:0016772
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06998: 31829-33323
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001230_020 0.0 - - hypothetical protein POPTR_0001s31610g [Populus trichocarpa]
2 Hb_012812_010 0.1128455394 - - putative leucine-rich repeat receptor-like serine/threonine-protein kinase [Morus notabilis]
3 Hb_000126_040 0.1475528721 - - kinase, putative [Ricinus communis]
4 Hb_072276_010 0.1519399453 - - PREDICTED: elongation of fatty acids protein 3-like [Jatropha curcas]
5 Hb_126103_010 0.1543850121 - - Phosphoprotein phosphatase [Theobroma cacao]
6 Hb_000032_020 0.1704566018 - - Centromeric protein E, putative [Ricinus communis]
7 Hb_001195_730 0.1719642282 - - PREDICTED: protein LYK5-like [Jatropha curcas]
8 Hb_001863_450 0.1745053049 - - cryptochrome 1.2 [Populus tremula]
9 Hb_002078_090 0.1857296262 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_001242_190 0.1857884425 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
11 Hb_001230_030 0.1872606801 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650 isoform X2 [Populus euphratica]
12 Hb_002395_020 0.1875287362 - - Protein CREG1 precursor, putative [Ricinus communis]
13 Hb_006718_040 0.1902900266 - - PREDICTED: starch synthase 3, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
14 Hb_007850_010 0.1906788244 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.4 [Jatropha curcas]
15 Hb_147873_010 0.1941232589 - - PREDICTED: uncharacterized protein LOC102595311 [Solanum tuberosum]
16 Hb_010921_020 0.1946118395 - - PREDICTED: cyclin-SDS [Jatropha curcas]
17 Hb_003371_140 0.1951273969 - - hypothetical protein POPTR_0001s23540g, partial [Populus trichocarpa]
18 Hb_000879_030 0.1962759163 - - PREDICTED: uncharacterized protein LOC103707552 [Phoenix dactylifera]
19 Hb_004166_010 0.1974462838 - - PREDICTED: uncharacterized protein LOC105638508 [Jatropha curcas]
20 Hb_002400_160 0.1975534291 - - Ubiquitin-protein ligase BRE1A, putative [Ricinus communis]

Gene co-expression network

sample Hb_001230_020 Hb_001230_020 Hb_012812_010 Hb_012812_010 Hb_001230_020--Hb_012812_010 Hb_000126_040 Hb_000126_040 Hb_001230_020--Hb_000126_040 Hb_072276_010 Hb_072276_010 Hb_001230_020--Hb_072276_010 Hb_126103_010 Hb_126103_010 Hb_001230_020--Hb_126103_010 Hb_000032_020 Hb_000032_020 Hb_001230_020--Hb_000032_020 Hb_001195_730 Hb_001195_730 Hb_001230_020--Hb_001195_730 Hb_001230_030 Hb_001230_030 Hb_012812_010--Hb_001230_030 Hb_002400_160 Hb_002400_160 Hb_012812_010--Hb_002400_160 Hb_019863_060 Hb_019863_060 Hb_012812_010--Hb_019863_060 Hb_002154_020 Hb_002154_020 Hb_012812_010--Hb_002154_020 Hb_000120_160 Hb_000120_160 Hb_012812_010--Hb_000120_160 Hb_001863_450 Hb_001863_450 Hb_000126_040--Hb_001863_450 Hb_004166_010 Hb_004166_010 Hb_000126_040--Hb_004166_010 Hb_000815_150 Hb_000815_150 Hb_000126_040--Hb_000815_150 Hb_000126_040--Hb_001195_730 Hb_000221_060 Hb_000221_060 Hb_000126_040--Hb_000221_060 Hb_072276_010--Hb_001863_450 Hb_072276_010--Hb_012812_010 Hb_072276_010--Hb_000221_060 Hb_007850_010 Hb_007850_010 Hb_072276_010--Hb_007850_010 Hb_072276_010--Hb_004166_010 Hb_003371_140 Hb_003371_140 Hb_126103_010--Hb_003371_140 Hb_147873_010 Hb_147873_010 Hb_126103_010--Hb_147873_010 Hb_002078_090 Hb_002078_090 Hb_126103_010--Hb_002078_090 Hb_126103_010--Hb_001863_450 Hb_136660_010 Hb_136660_010 Hb_126103_010--Hb_136660_010 Hb_000879_030 Hb_000879_030 Hb_000032_020--Hb_000879_030 Hb_002110_110 Hb_002110_110 Hb_000032_020--Hb_002110_110 Hb_000221_180 Hb_000221_180 Hb_000032_020--Hb_000221_180 Hb_073973_020 Hb_073973_020 Hb_000032_020--Hb_073973_020 Hb_000175_270 Hb_000175_270 Hb_000032_020--Hb_000175_270 Hb_005542_010 Hb_005542_010 Hb_000032_020--Hb_005542_010 Hb_006501_170 Hb_006501_170 Hb_001195_730--Hb_006501_170 Hb_011716_050 Hb_011716_050 Hb_001195_730--Hb_011716_050 Hb_001195_730--Hb_012812_010 Hb_001195_730--Hb_001230_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.200461 6.08887 0.856314 0.517747 0.256795 0.365035
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.409917 0.408515 0.36508 1.49109 3.02746

CAGE analysis