Hb_002078_090

Information

Type -
Description -
Location Contig2078: 50926-53194
Sequence    

Annotation

kegg
ID rcu:RCOM_1080820
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_002514939.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID B9RMH0
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1080820 PE=4 SV=1
Gene Ontology
ID GO:0005515
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_090 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_010261_030 0.1532107988 - - polyprotein [Citrus endogenous pararetrovirus]
3 Hb_126103_010 0.1553194937 - - Phosphoprotein phosphatase [Theobroma cacao]
4 Hb_147873_010 0.1587074942 - - PREDICTED: uncharacterized protein LOC102595311 [Solanum tuberosum]
5 Hb_062229_010 0.175639723 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
6 Hb_006718_040 0.1844585921 - - PREDICTED: starch synthase 3, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
7 Hb_000032_020 0.1844654985 - - Centromeric protein E, putative [Ricinus communis]
8 Hb_001230_020 0.1857296262 - - hypothetical protein POPTR_0001s31610g [Populus trichocarpa]
9 Hb_000233_100 0.1873010769 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
10 Hb_005155_010 0.188031408 - - amino acid transporter, putative [Ricinus communis]
11 Hb_001227_040 0.1891818634 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
12 Hb_001410_010 0.1893212514 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
13 Hb_002218_070 0.1904573904 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
14 Hb_000603_120 0.1929829521 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
15 Hb_002217_070 0.1929954626 - - PREDICTED: uncharacterized protein LOC105643596 [Jatropha curcas]
16 Hb_008195_020 0.1941307911 - - Vacuolar-processing enzyme precursor [Ricinus communis]
17 Hb_002475_130 0.1944948466 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4 [Jatropha curcas]
18 Hb_004605_020 0.1951539947 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
19 Hb_061908_020 0.1956092088 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
20 Hb_136880_010 0.1962139192 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]

Gene co-expression network

sample Hb_002078_090 Hb_002078_090 Hb_010261_030 Hb_010261_030 Hb_002078_090--Hb_010261_030 Hb_126103_010 Hb_126103_010 Hb_002078_090--Hb_126103_010 Hb_147873_010 Hb_147873_010 Hb_002078_090--Hb_147873_010 Hb_062229_010 Hb_062229_010 Hb_002078_090--Hb_062229_010 Hb_006718_040 Hb_006718_040 Hb_002078_090--Hb_006718_040 Hb_000032_020 Hb_000032_020 Hb_002078_090--Hb_000032_020 Hb_117840_010 Hb_117840_010 Hb_010261_030--Hb_117840_010 Hb_002609_130 Hb_002609_130 Hb_010261_030--Hb_002609_130 Hb_010261_030--Hb_062229_010 Hb_005155_010 Hb_005155_010 Hb_010261_030--Hb_005155_010 Hb_002218_070 Hb_002218_070 Hb_010261_030--Hb_002218_070 Hb_001971_020 Hb_001971_020 Hb_010261_030--Hb_001971_020 Hb_003371_140 Hb_003371_140 Hb_126103_010--Hb_003371_140 Hb_126103_010--Hb_147873_010 Hb_001230_020 Hb_001230_020 Hb_126103_010--Hb_001230_020 Hb_001863_450 Hb_001863_450 Hb_126103_010--Hb_001863_450 Hb_136660_010 Hb_136660_010 Hb_126103_010--Hb_136660_010 Hb_147873_010--Hb_136660_010 Hb_060909_010 Hb_060909_010 Hb_147873_010--Hb_060909_010 Hb_002475_130 Hb_002475_130 Hb_147873_010--Hb_002475_130 Hb_000233_100 Hb_000233_100 Hb_147873_010--Hb_000233_100 Hb_001391_100 Hb_001391_100 Hb_062229_010--Hb_001391_100 Hb_061908_020 Hb_061908_020 Hb_062229_010--Hb_061908_020 Hb_004605_020 Hb_004605_020 Hb_062229_010--Hb_004605_020 Hb_043939_010 Hb_043939_010 Hb_062229_010--Hb_043939_010 Hb_000197_230 Hb_000197_230 Hb_062229_010--Hb_000197_230 Hb_003106_210 Hb_003106_210 Hb_006718_040--Hb_003106_210 Hb_000067_030 Hb_000067_030 Hb_006718_040--Hb_000067_030 Hb_002518_270 Hb_002518_270 Hb_006718_040--Hb_002518_270 Hb_011174_100 Hb_011174_100 Hb_006718_040--Hb_011174_100 Hb_006501_170 Hb_006501_170 Hb_006718_040--Hb_006501_170 Hb_006718_040--Hb_002218_070 Hb_000879_030 Hb_000879_030 Hb_000032_020--Hb_000879_030 Hb_002110_110 Hb_002110_110 Hb_000032_020--Hb_002110_110 Hb_000221_180 Hb_000221_180 Hb_000032_020--Hb_000221_180 Hb_073973_020 Hb_073973_020 Hb_000032_020--Hb_073973_020 Hb_000175_270 Hb_000175_270 Hb_000032_020--Hb_000175_270 Hb_005542_010 Hb_005542_010 Hb_000032_020--Hb_005542_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0439976 0.671148 0.0506406 0.115493 0.00872808 0.0608646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.016667 0.0316531 0.25184 0.38809

CAGE analysis