Hb_006718_040

Information

Type -
Description -
Location Contig6718: 17051-33399
Sequence    

Annotation

kegg
ID rcu:RCOM_0904350
description starch synthase, putative (EC:2.4.1.21)
nr
ID XP_012091336.1
description PREDICTED: starch synthase 3, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
swissprot
ID F4IAG2
description Starch synthase 3, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SS3 PE=1 SV=1
trembl
ID A0A067JDD5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21214 PE=3 SV=1
Gene Ontology
ID GO:0016740
description starch synthase chloroplastic amyloplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53468: 22741-23231
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006718_040 0.0 - - PREDICTED: starch synthase 3, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
2 Hb_003106_210 0.1369083522 - - PREDICTED: UDP-glycosyltransferase 74B1-like [Jatropha curcas]
3 Hb_000067_030 0.153302813 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
4 Hb_002518_270 0.1544239331 - - glycogen phosphorylase, putative [Ricinus communis]
5 Hb_011174_100 0.1547983262 - - ubiquitin-protein ligase, putative [Ricinus communis]
6 Hb_006501_170 0.1590317217 - - hypothetical protein JCGZ_07371 [Jatropha curcas]
7 Hb_002218_070 0.1634368175 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
8 Hb_002045_220 0.1705197519 - - PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
9 Hb_002232_050 0.171244015 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
10 Hb_007709_010 0.1717148128 - - -
11 Hb_001946_060 0.1722031633 - - PREDICTED: TBC1 domain family member 13-like isoform X1 [Jatropha curcas]
12 Hb_001921_010 0.1783512827 - - ATP-dependent RNA helicase, putative [Ricinus communis]
13 Hb_003371_140 0.1809832801 - - hypothetical protein POPTR_0001s23540g, partial [Populus trichocarpa]
14 Hb_002078_090 0.1844585921 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_000668_160 0.1846409741 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
16 Hb_005542_110 0.1855960868 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01203 [Jatropha curcas]
17 Hb_003142_090 0.1865637574 - - Kinase, putative isoform 2 [Theobroma cacao]
18 Hb_000343_260 0.1874979941 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
19 Hb_003337_050 0.1879744043 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
20 Hb_048476_070 0.1880316246 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006718_040 Hb_006718_040 Hb_003106_210 Hb_003106_210 Hb_006718_040--Hb_003106_210 Hb_000067_030 Hb_000067_030 Hb_006718_040--Hb_000067_030 Hb_002518_270 Hb_002518_270 Hb_006718_040--Hb_002518_270 Hb_011174_100 Hb_011174_100 Hb_006718_040--Hb_011174_100 Hb_006501_170 Hb_006501_170 Hb_006718_040--Hb_006501_170 Hb_002218_070 Hb_002218_070 Hb_006718_040--Hb_002218_070 Hb_001365_050 Hb_001365_050 Hb_003106_210--Hb_001365_050 Hb_006316_030 Hb_006316_030 Hb_003106_210--Hb_006316_030 Hb_003106_210--Hb_002218_070 Hb_003106_210--Hb_006501_170 Hb_003106_210--Hb_000067_030 Hb_107543_010 Hb_107543_010 Hb_003106_210--Hb_107543_010 Hb_003142_090 Hb_003142_090 Hb_000067_030--Hb_003142_090 Hb_000067_030--Hb_001365_050 Hb_000067_030--Hb_006501_170 Hb_001140_320 Hb_001140_320 Hb_000067_030--Hb_001140_320 Hb_006970_150 Hb_006970_150 Hb_002518_270--Hb_006970_150 Hb_002518_270--Hb_006501_170 Hb_003337_050 Hb_003337_050 Hb_002518_270--Hb_003337_050 Hb_033045_010 Hb_033045_010 Hb_002518_270--Hb_033045_010 Hb_008948_080 Hb_008948_080 Hb_002518_270--Hb_008948_080 Hb_001946_060 Hb_001946_060 Hb_002518_270--Hb_001946_060 Hb_005542_110 Hb_005542_110 Hb_011174_100--Hb_005542_110 Hb_000876_050 Hb_000876_050 Hb_011174_100--Hb_000876_050 Hb_007709_010 Hb_007709_010 Hb_011174_100--Hb_007709_010 Hb_000512_040 Hb_000512_040 Hb_011174_100--Hb_000512_040 Hb_001454_160 Hb_001454_160 Hb_011174_100--Hb_001454_160 Hb_000684_010 Hb_000684_010 Hb_011174_100--Hb_000684_010 Hb_004218_160 Hb_004218_160 Hb_006501_170--Hb_004218_160 Hb_006501_170--Hb_008948_080 Hb_003371_140 Hb_003371_140 Hb_006501_170--Hb_003371_140 Hb_011214_140 Hb_011214_140 Hb_006501_170--Hb_011214_140 Hb_001410_010 Hb_001410_010 Hb_002218_070--Hb_001410_010 Hb_117840_010 Hb_117840_010 Hb_002218_070--Hb_117840_010 Hb_000236_110 Hb_000236_110 Hb_002218_070--Hb_000236_110 Hb_002600_010 Hb_002600_010 Hb_002218_070--Hb_002600_010 Hb_008175_030 Hb_008175_030 Hb_002218_070--Hb_008175_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0823016 2.814 0.406673 0.171918 0.059082 0.0700382
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0537285 0.0422781 0.0805768 1.5559 1.16794

CAGE analysis